View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12424_low_6 (Length: 399)
Name: NF12424_low_6
Description: NF12424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12424_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 26840111 - 26840243
Alignment:
| Q |
18 |
ctgtacatatatcatgagatccactatgacactatacttgcatcaataaacaaaaatgatactgtaattatttagacactttgtagacactatactttgc |
117 |
Q |
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| T |
26840111 |
ctgtacatatatcatgagatccactgtgacactatacttgcaccaataaacaaaaatgatattgtaattctttagacactttgtagacactatactttgc |
26840210 |
T |
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| Q |
118 |
agaggttgaaaaagagaagagcagcaccgaaaa |
150 |
Q |
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| T |
26840211 |
agaggttgaaaaagagaagagcagcaccgaaaa |
26840243 |
T |
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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 22463982 - 22464039
Alignment:
| Q |
195 |
ataggaataggtatggtgggttgattgtaccgaggagaaaaataggaataggtggaat |
252 |
Q |
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| T |
22463982 |
ataggtataggtatggtgggttgattgtaccgaggagaaaaataggaataggtggaat |
22464039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 50975209 - 50975266
Alignment:
| Q |
22 |
acatatatcatgagatccactatgacactatacttgcatcaataaacaaaaatgatac |
79 |
Q |
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| T |
50975209 |
acatatatcatgagatccactatgacactatacttgcaccaataaacaaaaatgatac |
50975266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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