View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12424_low_7 (Length: 359)

Name: NF12424_low_7
Description: NF12424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12424_low_7
NF12424_low_7
[»] chr7 (27 HSPs)
chr7 (22-344)||(7653416-7653738)
chr7 (45-172)||(35496540-35496667)
chr7 (46-172)||(27123286-27123412)
chr7 (40-160)||(28770501-28770621)
chr7 (38-170)||(44537355-44537487)
chr7 (40-172)||(35731299-35731430)
chr7 (45-160)||(28663106-28663221)
chr7 (39-171)||(21727367-21727499)
chr7 (45-176)||(43234798-43234928)
chr7 (67-172)||(39320971-39321076)
chr7 (66-173)||(25886181-25886288)
chr7 (45-147)||(14651357-14651459)
chr7 (45-172)||(3692889-3693017)
chr7 (63-160)||(43224072-43224169)
chr7 (70-174)||(26239533-26239637)
chr7 (66-160)||(34117859-34117953)
chr7 (67-143)||(9718983-9719059)
chr7 (45-160)||(35923474-35923585)
chr7 (40-134)||(8920665-8920759)
chr7 (67-160)||(10200593-10200685)
chr7 (91-172)||(27337709-27337790)
chr7 (69-173)||(40753938-40754041)
chr7 (72-111)||(48488172-48488211)
chr7 (102-172)||(18801052-18801122)
chr7 (136-173)||(7968617-7968654)
chr7 (48-173)||(29711463-29711588)
chr7 (40-100)||(17157731-17157791)
[»] chr4 (39 HSPs)
chr4 (45-176)||(51834922-51835053)
chr4 (45-172)||(37138129-37138256)
chr4 (72-172)||(35777693-35777793)
chr4 (40-176)||(45900111-45900247)
chr4 (45-176)||(7852511-7852642)
chr4 (38-172)||(50427001-50427135)
chr4 (45-172)||(7444352-7444480)
chr4 (63-172)||(8297883-8297992)
chr4 (45-154)||(36702814-36702919)
chr4 (38-174)||(47995697-47995833)
chr4 (70-172)||(50341859-50341961)
chr4 (45-160)||(31429301-31429416)
chr4 (42-172)||(24229610-24229740)
chr4 (36-174)||(37440836-37440974)
chr4 (30-176)||(53014158-53014304)
chr4 (39-160)||(31174612-31174733)
chr4 (90-176)||(49084412-49084499)
chr4 (42-172)||(34391671-34391801)
chr4 (69-170)||(41462063-41462164)
chr4 (64-176)||(24175385-24175496)
chr4 (105-172)||(51736366-51736433)
chr4 (45-114)||(23605634-23605703)
chr4 (70-172)||(42222967-42223069)
chr4 (70-176)||(49400620-49400726)
chr4 (45-153)||(8261139-8261247)
chr4 (45-153)||(8274556-8274664)
chr4 (83-160)||(27953046-27953123)
chr4 (70-172)||(20394650-20394750)
chr4 (67-143)||(13585250-13585326)
chr4 (40-134)||(7628009-7628102)
chr4 (74-172)||(25115260-25115357)
chr4 (66-108)||(37060625-37060667)
chr4 (64-172)||(12618681-12618788)
chr4 (48-99)||(14031282-14031333)
chr4 (130-176)||(23504749-23504795)
chr4 (67-121)||(24396249-24396303)
chr4 (45-154)||(31690412-31690520)
chr4 (125-173)||(23605974-23606022)
chr4 (40-100)||(33559098-33559158)
[»] chr5 (25 HSPs)
chr5 (40-172)||(18229564-18229696)
chr5 (45-172)||(30104816-30104943)
chr5 (36-172)||(30501097-30501234)
chr5 (36-172)||(30541440-30541577)
chr5 (71-172)||(9276573-9276674)
chr5 (68-160)||(16667282-16667374)
chr5 (42-173)||(3140825-3140956)
chr5 (36-174)||(8221132-8221270)
chr5 (66-160)||(7719228-7719322)
chr5 (45-176)||(17692270-17692400)
chr5 (42-173)||(41047997-41048128)
chr5 (36-173)||(112444-112581)
chr5 (68-172)||(15720079-15720183)
chr5 (45-160)||(8208203-8208318)
chr5 (69-155)||(2918587-2918675)
chr5 (40-160)||(34899099-34899218)
chr5 (63-114)||(7968460-7968511)
chr5 (91-170)||(40530448-40530527)
chr5 (43-173)||(5815036-5815166)
chr5 (45-143)||(13480060-13480159)
chr5 (45-100)||(31672495-31672550)
chr5 (75-170)||(39558764-39558859)
chr5 (36-101)||(5758644-5758709)
chr5 (72-173)||(23117221-23117321)
chr5 (39-100)||(29342401-29342462)
[»] chr8 (31 HSPs)
chr8 (39-174)||(27801187-27801322)
chr8 (36-175)||(4384094-4384232)
chr8 (45-172)||(42636333-42636460)
chr8 (38-172)||(28207636-28207770)
chr8 (36-176)||(1369818-1369957)
chr8 (45-172)||(33013057-33013183)
chr8 (66-170)||(3146050-3146158)
chr8 (69-171)||(1135174-1135276)
chr8 (36-160)||(2258049-2258173)
chr8 (91-160)||(167857-167926)
chr8 (62-173)||(33949534-33949645)
chr8 (91-170)||(2888729-2888812)
chr8 (74-160)||(35901955-35902041)
chr8 (36-172)||(12954740-12954876)
chr8 (45-172)||(37427200-37427329)
chr8 (31-162)||(45197399-45197530)
chr8 (65-143)||(36355944-36356022)
chr8 (40-160)||(12829835-12829953)
chr8 (101-160)||(5588984-5589043)
chr8 (101-172)||(17081394-17081465)
chr8 (40-123)||(26750611-26750694)
chr8 (36-174)||(9735263-9735400)
chr8 (74-160)||(12684490-12684576)
chr8 (74-171)||(24695760-24695856)
chr8 (37-101)||(3463501-3463565)
chr8 (92-160)||(3520822-3520890)
chr8 (102-172)||(37813426-37813497)
chr8 (68-114)||(884486-884532)
chr8 (130-176)||(12544988-12545034)
chr8 (40-93)||(16723169-16723222)
chr8 (91-155)||(33067531-33067595)
[»] chr1 (26 HSPs)
chr1 (41-172)||(47187785-47187915)
chr1 (40-154)||(2864172-2864285)
chr1 (39-172)||(38748683-38748815)
chr1 (39-155)||(43396976-43397092)
chr1 (45-172)||(45640559-45640685)
chr1 (69-176)||(39150590-39150697)
chr1 (45-145)||(34409773-34409872)
chr1 (40-172)||(44829284-44829415)
chr1 (35-160)||(44329620-44329745)
chr1 (38-172)||(14746160-14746294)
chr1 (39-176)||(34232672-34232805)
chr1 (96-176)||(8794424-8794504)
chr1 (69-160)||(31889186-31889278)
chr1 (69-172)||(39156273-39156380)
chr1 (67-172)||(7212785-7212885)
chr1 (91-155)||(604444-604508)
chr1 (43-174)||(17552843-17552972)
chr1 (96-172)||(38491233-38491309)
chr1 (65-154)||(4851232-4851321)
chr1 (67-160)||(44329488-44329581)
chr1 (80-160)||(40460725-40460805)
chr1 (45-172)||(2994940-2995065)
chr1 (72-158)||(36563730-36563814)
chr1 (40-172)||(3982277-3982408)
chr1 (91-176)||(8365511-8365596)
chr1 (104-176)||(26811258-26811330)
[»] chr2 (18 HSPs)
chr2 (69-172)||(9448945-9449047)
chr2 (66-176)||(19890177-19890287)
chr2 (30-172)||(41933143-41933285)
chr2 (41-160)||(1334847-1334966)
chr2 (45-169)||(31452314-31452437)
chr2 (41-172)||(31017271-31017402)
chr2 (69-176)||(19514879-19514986)
chr2 (42-208)||(34904752-34904928)
chr2 (41-160)||(15505568-15505687)
chr2 (69-172)||(4762361-4762464)
chr2 (64-155)||(29239235-29239326)
chr2 (92-176)||(7673202-7673286)
chr2 (68-174)||(9173696-9173803)
chr2 (74-176)||(20064919-20065020)
chr2 (73-172)||(38533864-38533962)
chr2 (72-174)||(37993088-37993190)
chr2 (39-79)||(41551385-41551425)
chr2 (120-172)||(43228867-43228919)
[»] chr3 (15 HSPs)
chr3 (65-174)||(51351287-51351396)
chr3 (45-176)||(29083866-29083998)
chr3 (39-171)||(48180132-48180264)
chr3 (45-176)||(42845977-42846104)
chr3 (36-172)||(12086721-12086857)
chr3 (75-160)||(40673458-40673543)
chr3 (69-160)||(26900014-26900106)
chr3 (36-172)||(39551814-39551949)
chr3 (101-160)||(22730509-22730568)
chr3 (92-154)||(24791526-24791588)
chr3 (69-160)||(41309842-41309936)
chr3 (40-99)||(8957697-8957755)
chr3 (68-114)||(26143168-26143214)
chr3 (91-160)||(42939856-42939925)
chr3 (92-160)||(49362368-49362436)
[»] chr6 (19 HSPs)
chr6 (39-159)||(30801766-30801886)
chr6 (42-172)||(17215647-17215777)
chr6 (64-160)||(31855078-31855174)
chr6 (46-158)||(9762828-9762939)
chr6 (40-160)||(32823701-32823821)
chr6 (83-173)||(1840994-1841084)
chr6 (39-172)||(7421684-7421817)
chr6 (68-173)||(23399121-23399226)
chr6 (44-173)||(28874410-28874539)
chr6 (36-176)||(27778762-27778900)
chr6 (78-160)||(3766301-3766383)
chr6 (71-176)||(19293446-19293551)
chr6 (39-174)||(5446625-5446758)
chr6 (45-172)||(2864890-2865016)
chr6 (69-174)||(30739609-30739714)
chr6 (69-172)||(1479084-1479186)
chr6 (125-172)||(2692477-2692524)
chr6 (125-176)||(11720925-11720976)
chr6 (91-160)||(26669292-26669361)
[»] scaffold0036 (1 HSPs)
scaffold0036 (45-170)||(62492-62617)
[»] scaffold0268 (1 HSPs)
scaffold0268 (67-160)||(20238-20330)
[»] scaffold0419 (1 HSPs)
scaffold0419 (44-173)||(1076-1205)
[»] scaffold1444 (2 HSPs)
scaffold1444 (97-160)||(1723-1786)
scaffold1444 (96-176)||(950-1030)
[»] scaffold0119 (1 HSPs)
scaffold0119 (91-160)||(1432-1501)
[»] scaffold0003 (1 HSPs)
scaffold0003 (69-170)||(103640-103741)
[»] scaffold0004 (1 HSPs)
scaffold0004 (96-172)||(335866-335942)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 344
Target Start/End: Complemental strand, 7653738 - 7653416
Alignment:
Q  22 cagaagaattaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  7653738 cagaagaattaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaagtaagtttttaatgaaaagttgtgtaatgaa 7653639  T
Q  122 tgaattggaaattataatagttgactttttaaaagaatagttgctaaatttaggagtgccccgagagcactcgttaacaagacccatgttttaattggat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7653638 tgaattggaaattataatagttgactttttaaaagaatagttgctaaatttaggagtgccccgggagcactcgttaacaagacccatgttttaattggat 7653539  T
Q  222 acatttctattgatgttttaaaaatatttaggccaaaaatataaatgcatgctaagctccttacttttaaaaatgttacacttctacacaaacaatgtta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653538 acatttctattgatgttttaaaaatatttaggccaaaaatataaatgcatgctaagctccttacttttaaaaatgttacacttctacacaaacaatgtta 7653439  T
Q  322 tgaacaatgaaatttgcgcacag 344  Q
    |||||||||||||||||||||||    
T  7653438 tgaacaatgaaatttgcgcacag 7653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 35496540 - 35496667
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| | |||||| |||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| |||| ||||| |||||||||    
T  35496540 aaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaagtttttaatgaaaaattgtgtaatgaatgcattgaaaattgtaatagttg 35496639  T
Q  145 actttttaaaagaatagttgctaaattt 172  Q
    |||||||||||  |||||| ||||||||    
T  35496640 actttttaaaaatatagttactaaattt 35496667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 27123412 - 27123286
Alignment:
Q  46 aatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttga 145  Q
    ||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||| ||||||||||| | | |||| |||||||||| ||||||||||    
T  27123412 aatgttaacgagtgcccccggggcactctttaagcactttaaatggtaagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttga 27123313  T
Q  146 ctttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||||  || ||||||||    
T  27123312 ctttttaaaagaatgattactaaattt 27123286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 28770621 - 28770501
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| |  |||| |||||||||||||||| ||||  |||||||||||||||||||||||| | |||||| |||||||||| ||||    
T  28770621 aagggaaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaat 28770522  T
Q  140 agttgactttttaaaagaata 160  Q
    ||||||||||| |||||||||    
T  28770521 agttgacttttcaaaagaata 28770501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 44537487 - 44537355
Alignment:
Q  38 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 137  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||||||||  ||||||||||||||||||||| || | |  ||  | |||||||||||    
T  44537487 ttaagggaaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttatgtattatatacaatggaaattata 44537388  T
Q  138 atagttgactttttaaaagaatagttgctaaat 170  Q
    ||||||||||||||||||||||| || ||||||    
T  44537387 atagttgactttttaaaagaataattactaaat 44537355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 35731430 - 35731299
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| | |||||| |||||||||||||||||||   ||||||| || || |||||||||| | | | || |||||||||| ||||    
T  35731430 aagggaaatgttaacgagtgcccccggg-cactctttaagcactttaattagtaagttctttataaaaagttgtgtattaagtgcattggaaattgtaat 35731332  T
Q  140 agttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||||||||||||||| |||||||    
T  35731331 agttgactttttaaaagaatagttgttaaattt 35731299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 28663106 - 28663221
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||| | |  ||||| ||||||||||||||||||||  ||||| |||||||||||| ||||| | |||||| |||| ||||| |||||||||    
T  28663106 aaatgttaacgaatgcctccggggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagttg 28663205  T
Q  145 actttttaaaagaata 160  Q
    ||||||||||||||||    
T  28663206 actttttaaaagaata 28663221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 21727367 - 21727499
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    ||||| |||||||||||||| |    ||| |||||||||||||||| ||| | |||||||||||| || | ||||| | |||||| |||||||||| |||    
T  21727367 taagggaaatgttaacgagtgcctttggggcactctttaagcacttcaaatgataagtttttaataaatatttgtgtattgaatgtattggaaattgtaa 21727466  T
Q  139 tagttgactttttaaaagaatagttgctaaatt 171  Q
    |||||||||||||||||||||| || |||||||    
T  21727467 tagttgactttttaaaagaataattactaaatt 21727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 43234928 - 43234798
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| | | |||| ||||||||||||||||||||  |||| |||||||||||||||| || | |||||| | |||||||| ||||||||     
T  43234928 aaatgttaacgagtgccctcggg-cactctttaagcactttaaatagtaaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatagttt 43234830  T
Q  145 actttttaaaagaatagttgctaaatttagga 176  Q
    | |||||||||||||| || |||||| |||||    
T  43234829 attttttaaaagaataattactaaatatagga 43234798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 39320971 - 39321076
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgct 166  Q
    |||||||||||||||||||||   |||||||||| || |||||||||| | |||||  |||| ||||| ||||||||||||||||||||||||| ||| |    
T  39320971 gacactctttaagcactttaattagtaagttttttattaaaagttgtgtattgaatacattgaaaattgtaatagttgactttttaaaagaataattgtt 39321070  T
Q  167 aaattt 172  Q
    ||||||    
T  39321071 aaattt 39321076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 25886288 - 25886181
Alignment:
Q  66 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgc 165  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||| | | |||| |||| ||||| |||||||||||||| ||| |||||| || |    
T  25886288 ggacactctttaaacactttaaatggtaagttttatatgaaaagttgtgtattaaatgtattgaaaattgtaatagttgactttctaagagaataatttc 25886189  T
Q  166 taaattta 173  Q
    ||||||||    
T  25886188 taaattta 25886181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 14651357 - 14651459
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| | | |||| |||||||||||||||| |||  ||| |||||||||||||||||||| ||||| || |||||||||| ||| |||||    
T  14651357 aaatgttaacgagtgccctcggggcactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtaatgattgcattggaaattgtaacagttg 14651456  T
Q  145 act 147  Q
    |||    
T  14651457 act 14651459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 3693017 - 3692889
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttta-atgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    ||||||||||||||  | ||||| ||||||||||| | |||||   ||||||||||  ||||||| ||||| | ||| || |||||||||| ||||||||    
T  3693017 aaatgttaacgagtgtttccggggcactctttaagtattttaattagtaagtttttttatgaaaaattgtgtattgagtgcattggaaattgtaatagtt 3692918  T
Q  144 gactttttaaaagaatagttgctaaattt 172  Q
    || |||||||||||||| |||||||||||    
T  3692917 gattttttaaaagaataattgctaaattt 3692889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 43224072 - 43224169
Alignment:
Q  63 ccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||| || |||||||||||||||||  | |||||||||||||||||||||| | |  ||  |||||||||| ||| |||||||||||||||||||||    
T  43224072 ccggggcattctttaagcactttaaatagcaagtttttaatgaaaagttgtgtattacatacattggaaattgtaacagttgactttttaaaagaata 43224169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 26239533 - 26239637
Alignment:
Q  70 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 169  Q
    ||||||||| |||||||||  |||||||||||||||||| ||||  | | |||| |||||||| |||||  ||| ||||||| |||||||| ||||||||    
T  26239533 actctttaaacactttaaatagtaagtttttaatgaaaaattgtatattcaatgcattggaaactataaacgttaactttttgaaagaataattgctaaa 26239632  T
Q  170 tttag 174  Q
    |||||    
T  26239633 tttag 26239637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 34117859 - 34117953
Alignment:
Q  66 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||||||||| |||||| | |||||||||||| |||| ||||  ||| || | |||||||||  |||||||||||||| ||||| ||||    
T  34117859 ggacactctttaagcattttaaatgataagtttttaataaaaaattgtataattaacgcattggaaatcgtaatagttgactttctaaaataata 34117953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 9718983 - 9719059
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||||||||||||||| ||||||||||  |||||||||| || |||||||  |||| ||||| ||| ||||    
T  9718983 gacactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 9719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 35923474 - 35923585
Alignment:
Q  45 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||||||| ||||| || ||||||||||| |||||||||   |||||||||| |||||||||    | |||||| |||||||||| ||||||||    
T  35923474 aaatgttaacgagtgtctcc-ggaacactctttaaacactttaaataataagtttttattgaaaagtt----attgaatgcattggaaattgtaatagtt 35923568  T
Q  144 gactttttaaaagaata 160  Q
     | |||| |||||||||    
T  35923569 tatttttaaaaagaata 35923585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 8920665 - 8920759
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 134  Q
    |||| ||||||||||||||   || ||| |||||||||||  ||||||||||||| |||||  ||||||||| || ||| |||| ||||||||||    
T  8920665 aagggaaatgttaacgagtggccctggggcactctttaagacctttaaaaggtaatttttttttgaaaagttatgtaatcaatgcattggaaatt 8920759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 10200685 - 10200593
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||||||||||||||| | ||||||||| ||  |||||| || | | |||| ||| |||||| |||  ||||||||||||||||||||    
T  10200685 gacactctttaagcactttaaatgataagttttt-atagaaagttatgtatttaatgcatttgaaattgtaacggttgactttttaaaagaata 10200593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 27337790 - 27337709
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||| ||||||||||||| | | |||| |||| ||| | |||||||||| ||||| |||||||| ||| |||||||    
T  27337790 gtaagttttttatgaaaagttgtgtatttaatgtattgtaaactgtaatagttgatttttttaaagaataattgttaaattt 27337709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 40753938 - 40754041
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    |||||||||| || |||||| | ||||||||||||||||||||||| | | |||| ||| |||| | |||||||||| ||||| ||| |||| ||  |||    
T  40753938 cactctttaaacattttaaatgataagtttttaatgaaaagttgtgtattaaatgtatt-gaaaatgtaatagttgatttttttaaaaaataattattaa 40754036  T
Q  169 attta 173  Q
    |||||    
T  40754037 attta 40754041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 48488172 - 48488211
Alignment:
Q  72 tctttaagcactttaaaaggtaagtttttaatgaaaagtt 111  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  48488172 tctttaagcactttaaatgataagtttttaatgaaaagtt 48488211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 18801122 - 18801052
Alignment:
Q  102 atgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||| | | | || |||| ||||| ||||||||||||||| |||||| || |||||||||||    
T  18801122 atgaaaagttgtgtattcattgtattgaaaattgtaatagttgacttttgaaaagagtaattgctaaattt 18801052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 7968617 - 7968654
Alignment:
Q  136 taatagttgactttttaaaagaatagttgctaaattta 173  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  7968617 taatagttgattttttaaaagaataattgctaaattta 7968654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 29711463 - 29711588
Alignment:
Q  48 tgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgact 147  Q
    ||||||||||| || ||||  |||| ||||| ||||| ||| | ||| ||||  || |||| || || |||||||  |||| |||||||||| ||||| |    
T  29711463 tgttaacgagtgcttccggatcactatttaaacacttaaaatgataaattttatataaaaaattatgtaatgaatacattgaaaattataattgttgatt 29711562  T
Q  148 ttttaaaagaatagttgctaaattta 173  Q
    ||||||||||| | || |||||||||    
T  29711563 ttttaaaagaaaaatttctaaattta 29711588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 17157731 - 17157791
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 100  Q
    |||| |||||||||||||| | |||| | |||||||||||  ||||||||||||| |||||    
T  17157731 aagggaaatgttaacgagtgcccccgaggcactctttaagacctttaaaaggtaacttttt 17157791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 51835053 - 51834922
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    ||||||||||||||  ||||| |||||||||||| |||||||||  |||| ||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  51835053 aaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagttg 51834954  T
Q  145 actttttaaaagaatagttgctaaatttagga 176  Q
    |||||||||||||||| |||||||||||||||    
T  51834953 actttttaaaagaataattgctaaatttagga 51834922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 37138129 - 37138256
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| || ||||||||||||||||||| |||||   | ||||| || ||||||||||||| | ||| || ||||||||||||||||||||    
T  37138129 aaatgttaacgagtgcttccgggacactctttaagcaatttaattagaaagttctttatgaaaagttgtgtattgagtgcattggaaattataatagttg 37138228  T
Q  145 actttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||||||||||||||||||    
T  37138229 actttttaaaagaatagttgctaaattt 37138256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 35777693 - 35777793
Alignment:
Q  72 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||| |||||| |||||||| |||||||||||||||| || |||||||    
T  35777693 tctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaactttttaaaagaataattactaaatt 35777792  T
Q  172 t 172  Q
    |    
T  35777793 t 35777793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 45900111 - 45900247
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| | || ||| |||||||||||||||||||   ||||||||   ||||||||||||| | |||||| |||||||||| | ||    
T  45900111 aagggaaatgttaacgagtgccccgggggcactctttaagcactttaattagtaagtttcatatgaaaagttgtgtattgaatgcattggaaattgtgat 45900210  T
Q  140 agttgactttttaaaagaatagttgctaaatttagga 176  Q
    |||||||||| |||||||||| |||||||||||||||    
T  45900211 agttgactttataaaagaataattgctaaatttagga 45900247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 7852511 - 7852642
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||| ||||||||| |  ||||| ||||||||||||||||||||  |||||||||||||||||||||||| | | |||| |||| ||||| ||||||||     
T  7852511 aaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagtta 7852610  T
Q  145 actttttaaaagaatagttgctaaatttagga 176  Q
    | |||||||||||||| || ||||||||||||    
T  7852611 attttttaaaagaataattactaaatttagga 7852642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 50427135 - 50427001
Alignment:
Q  38 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 137  Q
    ||||||||||||||||||||| | || | | |||||||||| |||||||||  |||| |||||||||||||||||||   ||| || |||||||||| ||    
T  50427135 ttaaggaaaatgttaacgagtgcccctgtggcactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgta 50427036  T
Q  138 atagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||| ||||||||| || ||||||||    
T  50427035 atagttgacttttcaaaagaataattactaaattt 50427001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 7444352 - 7444480
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| |||||| |||||||||||| |||||||||   ||||||||||| ||||||||||| | |||||| |||| ||||| |||||||||    
T  7444352 aaatgttaacgagtgctcccgagacactctttaaacactttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaatagttg 7444451  T
Q  145 ac-tttttaaaagaatagttgctaaattt 172  Q
    || |||||||||| ||| || ||||||||    
T  7444452 acttttttaaaagtataattactaaattt 7444480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 8297992 - 8297883
Alignment:
Q  63 ccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagt 162  Q
    ||||| || |||||||||||||||||  |||||||||||||||||| ||||| | |||||| |||||||||| ||| ||||||| ||||||||||||| |    
T  8297992 ccggggcaatctttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataat 8297893  T
Q  163 tgctaaattt 172  Q
    | ||||||||    
T  8297892 tactaaattt 8297883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 36702919 - 36702814
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    ||||||||||||||||  |||||||||||||||||||||||||    ||||||||||||||||| ||||| | |||||| |||| ||||| ||||| |||    
T  36702919 aaatgttaacgagttcctccgggacactctttaagcactttaa----taagtttttaatgaaaaattgtgtattgaatgcattgaaaattgtaataattg 36702824  T
Q  145 actttttaaa 154  Q
    ||||||||||    
T  36702823 actttttaaa 36702814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 47995697 - 47995833
Alignment:
Q  38 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 137  Q
    ||||||||||||||||| |||   || | ||| ||||||||||||||||||  ||||||||||||||||||||| || | |||||| |||| ||||| ||    
T  47995697 ttaaggaaaatgttaacaagtgtccctgagactctctttaagcactttaaattgtaagtttttaatgaaaagttatgtattgaatgcattgaaaattgta 47995796  T
Q  138 atagttgactttttaaaagaatagttgctaaatttag 174  Q
    ||| || ||||||||||||| || || ||||||||||    
T  47995797 ataattaactttttaaaagagtaattactaaatttag 47995833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 50341859 - 50341961
Alignment:
Q  70 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 169  Q
    ||||||||||||||||| |  |||| |||| |||||||||||||| | ||||||  ||||||||| ||||||||||||||||||||||||| || |||||    
T  50341859 actctttaagcactttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatagttgactttttaaaagaataattactaaa 50341958  T
Q  170 ttt 172  Q
    |||    
T  50341959 ttt 50341961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 31429416 - 31429301
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||| ||||| || ||  |||| | ||||||||||||||   ||||||||| |||||||||||||| | |||||| |||||||||| |||||||||    
T  31429416 aaatgttatcgagtgcttccatgacattttttaagcactttaattagtaagttttaaatgaaaagttgtgtattgaatgcattggaaattgtaatagttg 31429317  T
Q  145 actttttaaaagaata 160  Q
    | ||||||||||||||    
T  31429316 attttttaaaagaata 31429301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 24229610 - 24229740
Alignment:
Q  42 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 141  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||    |||||||||||||||| ||||| | | |||| |||| ||||| | |||     
T  24229610 ggaaaatgttaacgggtgctcccgagacactctttaagcactttaaataaaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgataa 24229709  T
Q  142 ttgactttttaaaagaatagttgctaaattt 172  Q
    || |||||| ||||||||| || ||||||||    
T  24229710 tttacttttaaaaagaataattactaaattt 24229740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 37440974 - 37440836
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    |||||||| |||||||||||||| | |  | ||||||||||||| |||||||| ||||| ||| ||||||||| || || | ||||   |||| |||||     
T  37440974 ttttaagggaaatgttaacgagtgcccttgagacactctttaagtactttaaatggtaaatttataatgaaaaattatgtattgaacacattgaaaattg 37440875  T
Q  136 taatagttgactttttaaaagaatagttgctaaatttag 174  Q
    |||||||||||||||||||| |||| || ||||||||||    
T  37440874 taatagttgactttttaaaataataattactaaatttag 37440836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 53014158 - 53014304
Alignment:
Q  30 ttaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattgg 129  Q
    ||||||| || | ||||||||||| |||| |   ||||| | || |||||||||||||| |||| ||||||||| |||||||||| | |||||| |||||    
T  53014158 ttaatgtctttaagaaaatgttaatgagtgccttcgggaaattcgttaagcactttaaatggtatgtttttaataaaaagttgtgtattgaatgtattgg 53014257  T
Q  130 aaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||| |||||||| | |||||||||  ||| || ||||||||||||    
T  53014258 aaattgtaatagttaattttttaaaaagataattactaaatttagga 53014304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 31174612 - 31174733
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    ||||| |||||||||||||| || | |||| | |||||||  |||||||| | ||| ||||||||||||||||||| |||||||  |||| ||||| |||    
T  31174612 taagggaaatgttaacgagtgcttctgggatattctttaaatactttaaatgataaatttttaatgaaaagttgtgtaatgaatatattgaaaattgtaa 31174711  T
Q  139 tagttgactttttaaaagaata 160  Q
     |||| ||||||||||||||||    
T  31174712 cagttaactttttaaaagaata 31174733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 49084412 - 49084499
Alignment:
Q  90 ggtaagtttttaatgaaaagttgtgcaatgaatga-attggaaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||||||||||||||||||||||| | |||||   |||| ||||| ||||||||||||||||||||||||| || ||||||||||||    
T  49084412 ggtaagtttttaatgaaaagttgtgtattgaatttcattgaaaattgtaatagttgactttttaaaagaataattactaaatttagga 49084499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 34391671 - 34391801
Alignment:
Q  42 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 141  Q
    ||||||||||||||||| ||  || |  ||||||||| ||||| |||  ||||||||||||| |||||||||| | ||| || |||||||||| |||||     
T  34391671 ggaaaatgttaacgagtactttcgaggtactctttaaacacttaaaatagtaagtttttaataaaaagttgtgtattgattgcattggaaattgtaataa 34391770  T
Q  142 ttgactttttaaaagaatagttgctaaattt 172  Q
     ||||||| |||||||||| || ||||||||    
T  34391771 ctgactttataaaagaataattactaaattt 34391801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 41462164 - 41462063
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    ||||||||||||| ||||||  |||||||||||||||||| || || | | |||| ||  |||||| ||||||||||||||||||||||||| || ||||    
T  41462164 cactctttaagcattttaaatagtaagtttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttgactttttaaaagaataattactaa 41462065  T
Q  169 at 170  Q
    ||    
T  41462064 at 41462063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 24175385 - 24175496
Alignment:
Q  64 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagtt 163  Q
    |||| |||||||||||||||||||| ||||||||||  | ||||||||||| | | |||| |||  ||||| |||||||| || ||||||||||||| ||    
T  24175385 cggggcactctttaagcactttaaatggtaagttttgtacgaaaagttgtgtattaaatgcatttaaaattgtaatagtttac-ttttaaaagaatattt 24175483  T
Q  164 gctaaatttagga 176  Q
     ||||||||||||    
T  24175484 actaaatttagga 24175496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 51736433 - 51736366
Alignment:
Q  105 aaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||| | | |||| |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  51736433 aaaagttgtgtattcaatgtattgaaaattataatagttgactttttaaaagaataattgctaaattt 51736366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 23605634 - 23605703
Alignment:
Q  45 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 114  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||    
T  23605634 aaatgttaacgagtgtctcc-gggatactttttaagcactttaaatggtaagtttttaatgaaaagttgtg 23605703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 42223069 - 42222967
Alignment:
Q  70 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 169  Q
    |||||||||| |||| ||  |||||||||||||| |||| ||||| | |||||| |||| |||||||||||||||  ||||||||  ||||||| |||||    
T  42223069 actctttaagtacttaaagtggtaagtttttaataaaaaattgtgtattgaatgcattgaaaattataatagttggttttttaaataaatagttactaaa 42222970  T
Q  170 ttt 172  Q
    |||    
T  42222969 ttt 42222967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 49400726 - 49400620
Alignment:
Q  70 actctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaa 169  Q
    |||||||||||||||||||    ||  |||||||||||||| ||| | | |||  |||||||||| |||||||||| |||||||||||||| || |||||    
T  49400726 actctttaagcactttaaataacaaaattttaatgaaaagtcgtgtattaaatacattggaaattgtaatagttgattttttaaaagaataattactaaa 49400627  T
Q  170 tttagga 176  Q
    |||||||    
T  49400626 tttagga 49400620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 8261247 - 8261139
Alignment:
Q  45 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||||||| ||||  ||| ||||||| ||||||||||||  ||||||||||||||||||||| || | | |||| |||| ||||| ||| ||||    
T  8261247 aaatgttaacgagtgtctctgggg-cactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagtt 8261149  T
Q  144 gactttttaa 153  Q
    ||||||||||    
T  8261148 gactttttaa 8261139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 8274664 - 8274556
Alignment:
Q  45 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||||||| ||||  ||| ||||||| ||||||||||||  ||||||||||||||||||||| || | | |||| |||| ||||| ||| ||||    
T  8274664 aaatgttaacgagtgtctctgggg-cactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagtt 8274566  T
Q  144 gactttttaa 153  Q
    ||||||||||    
T  8274565 gactttttaa 8274556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 27953046 - 27953123
Alignment:
Q  83 tttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||| ||||||||||||| ||||||||||| | |||||| |||| ||||| |||||||| ||||||||||| ||||    
T  27953046 tttaaatggtaagtttttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaactttttaaaataata 27953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 20394750 - 20394650
Alignment:
Q  70 actctttaagcactttaaaaggtaagtttttaatgaaaa-gttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    ||||||||| || |||||| || |||||||||||||||| |||||  | |||||| |||||||||| |||||||| |||||||||||||||| || ||||    
T  20394750 actctttaaacattttaaatgg-aagtttttaatgaaaatgttgt--attgaatgtattggaaattgtaatagttcactttttaaaagaataattactaa 20394654  T
Q  169 attt 172  Q
    ||||    
T  20394653 attt 20394650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 13585250 - 13585326
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||||||||||||||| ||||||||||  |||||||||| || |||||||  |||| ||||| ||| ||||    
T  13585250 gacactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 13585326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 7628102 - 7628009
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 134  Q
    |||| |||||||||||||| | |||||| |||||||||||  ||||||||||||| |||||  ||||||||| || ||  |||| ||||||||||    
T  7628102 aagggaaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaacttttt-ttgaaaagttatgtaaccaatgtattggaaatt 7628009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 25115260 - 25115357
Alignment:
Q  74 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||| |||||||||  ||||||||||| | |||||||||| | | | || |||||||||| |||||||| ||||||||||| |||| || ||||||||    
T  25115260 tttaaacactttaaatagtaagttttta-taaaaagttgtgtattcactgcattggaaattgtaatagttaactttttaaaataataattactaaattt 25115357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 37060667 - 37060625
Alignment:
Q  66 ggacactctttaagcactttaaaaggtaagtttttaatgaaaa 108  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  37060667 ggacactttttaagcactttaaatggtaagtttttaatgaaaa 37060625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 12618681 - 12618788
Alignment:
Q  64 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagtt 163  Q
    |||| |||||||||| ||| || |||| |||||||||| |||||| ||||  ||| |||| |||| || |||||| | |||||||||||||| |||| ||    
T  12618681 cggggcactctttaaacacctttaaagttaagttttta-tgaaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaaataatt 12618779  T
Q  164 gctaaattt 172  Q
     ||||||||    
T  12618780 tctaaattt 12618788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 14031282 - 14031333
Alignment:
Q  48 tgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttt 99  Q
    ||||||||||| | |||||  |||||||||||||||||||| ||||||||||    
T  14031282 tgttaacgagtgcacccggtgcactctttaagcactttaaacggtaagtttt 14031333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 23504795 - 23504749
Alignment:
Q  130 aaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||| |||||||||| |||||||||||||| || ||||||||||||    
T  23504795 aaattttaatagttgattttttaaaagaataatttctaaatttagga 23504749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 24396303 - 24396249
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaa 121  Q
    ||||||||||||| |||||||| ||||||||||  |||||||||| || ||||||    
T  24396303 gacactctttaagtactttaaatggtaagttttatatgaaaagttatgtaatgaa 24396249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 31690520 - 31690412
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| | | ||| |||||| |||| |||||||||  |||| ||| | ||||||||||||| | | |||| |||| |||||  || |||||    
T  31690520 aaatgttaacgagtgccctcgg-acactccttaaacactttaaatagtaaatttcttatgaaaagttgtgtattcaatgcattgaaaattgcaacagttg 31690422  T
Q  145 actttttaaa 154  Q
    ||||||||||    
T  31690421 actttttaaa 31690412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 23605974 - 23606022
Alignment:
Q  125 attggaaattataatagttgactttttaaaagaatagttgctaaattta 173  Q
    |||||||||| ||||| || |||||||||||||||| || |||||||||    
T  23605974 attggaaattgtaataattaactttttaaaagaataattactaaattta 23606022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 33559098 - 33559158
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 100  Q
    ||||||||||||||||||| |||  || |||||||||||   ||||||||||||| |||||    
T  33559098 aaggaaaatgttaacgagtgctcttggaacactctttaaaacctttaaaaggtaatttttt 33559158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 18229564 - 18229696
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||  | |||||| |||||||||| ||||    
T  18229564 aagggaaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagtttttaatgaaaaattgtttattgaatgtattggaaattgtaat 18229663  T
Q  140 agttgactttttaaaagaatagttgctaaattt 172  Q
    |||| |||||||||||||||| || ||||||||    
T  18229664 agttaactttttaaaagaataattactaaattt 18229696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 30104943 - 30104816
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||| ||| | |||||  |||||||||| ||||||||  ||||||||||||||||||||||||| | |||||| |||||||||| |||| ||||    
T  30104943 aaatgttaactagtgcccccggagcactctttaaacactttaagtggtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaattgttg 30104844  T
Q  145 actttttaaaagaatagttgctaaattt 172  Q
    ||||||||||| ||||||| ||||||||    
T  30104843 actttttaaaaaaatagttactaaattt 30104816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 30501097 - 30501234
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctccc-gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 134  Q
    ||||| || |||||||||||||| | ||| ||| ||||  ||||||||||||||  ||||||||| |||||||||||||| | |||||| ||||||||||    
T  30501097 ttttatgggaaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaatt 30501196  T
Q  135 ataatagttgactttttaaaagaatagttgctaaattt 172  Q
     ||||| ||||||||||||||||||| || ||||||||    
T  30501197 gtaataattgactttttaaaagaataattactaaattt 30501234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 30541440 - 30541577
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctccc-gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 134  Q
    ||||| || |||||||||||||| | ||| ||| ||||  ||||||||||||||  ||||||||| |||||||||||||| | |||||| ||||||||||    
T  30541440 ttttatgggaaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaatt 30541539  T
Q  135 ataatagttgactttttaaaagaatagttgctaaattt 172  Q
     ||||| ||||||||||||||||||| || ||||||||    
T  30541540 gtaataattgactttttaaaagaataattactaaattt 30541577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 9276573 - 9276674
Alignment:
Q  71 ctctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 170  Q
    ||||||||||||||||||  ||||||||||||||||||||| || | |||||| |||| |||||||||||||||| ||||||||| |||| || ||||||    
T  9276573 ctctttaagcactttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgattttttaaaaaaataattactaaat 9276672  T
Q  171 tt 172  Q
    ||    
T  9276673 tt 9276674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 16667282 - 16667374
Alignment:
Q  68 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||| |||||||||||||||  |||||||||||||||||| ||||| | |||||| |||||||||| ||||| |||||||||||||||||||    
T  16667282 acactttttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataattgactttttaaaagaata 16667374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 3140956 - 3140825
Alignment:
Q  42 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 141  Q
    |||||||||||| ||||  ||||||||||| |||||| |||||||||   |||||||| ||| |||||||||  | | ||||||||| ||||| ||||||    
T  3140956 ggaaaatgttaatgagtgttcccgggacacactttaaacactttaaataataagttttaaataaaaagttgtatattaaatgaattgaaaattgtaatag 3140857  T
Q  142 ttgactttttaaaagaatagttgctaaattta 173  Q
    ||||||||||||||||||| ||  ||||||||    
T  3140856 ttgactttttaaaagaataattattaaattta 3140825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 8221270 - 8221132
Alignment:
Q  36 ttttaaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 134  Q
    |||||||||||||||||| |||| ||||| | | || |||||||||| ||||||  ||||||||||||| |||| ||||| | |||||| |||| || ||    
T  8221270 ttttaaggaaaatgttaatgagtgtctccggag-cattctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagtt 8221172  T
Q  135 ataatagttgactttttaaaagaatagttgctaaatttag 174  Q
     |||||||||||||||||| |||||| |||||||||||||    
T  8221171 gtaatagttgactttttaagagaataattgctaaatttag 8221132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 7719322 - 7719228
Alignment:
Q  66 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||||| |||||||||||||||   ||||||||||||||||||||||| | |||||  |||||||||| |||||||||| ||||||||||||||    
T  7719322 ggacactttttaagcactttaaataataagtttttaatgaaaagttgtgtattgaatatattggaaattgtaatagttgattttttaaaagaata 7719228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 17692400 - 17692270
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| | ||||||  ||||||||||||||| |||  ||| |||||||||||||||||||| | | | || |||| ||||| ||| |||||    
T  17692400 aaatgttaacgagtgcccccgggt-actctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtagtaattgcattgaaaattgtaacagttg 17692302  T
Q  145 actttttaaaagaatagttgctaaatttagga 176  Q
    ||||||||| |||||| || ||||||||||||    
T  17692301 actttttaagagaataattactaaatttagga 17692270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 173
Target Start/End: Complemental strand, 41048128 - 41047997
Alignment:
Q  42 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 141  Q
    |||||||||||||| || |  || ||| |||||||||| |||| ||| ||  |||||||||||||||  |||||| | |||| ||||||||||||||||     
T  41048128 ggaaaatgttaacgggtgcctccaggatactctttaagtacttaaaatgggtagtttttaatgaaaaagtgtgcatttaatgcattggaaattataataa 41048029  T
Q  142 ttgactttttaaaagaatagttgctaaattta 173  Q
    || || |||||||| |||| ||||||||||||    
T  41048028 ttaaccttttaaaaaaataattgctaaattta 41047997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 112444 - 112581
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    ||||||||||| ||||||||||| | || ||||||||||||||||||||||||    || ||||||||||||| ||||| | | |||  |||| |||||     
T  112444 ttttaaggaaactgttaacgagtgccccggggacactctttaagcactttaaataacaaatttttaatgaaaaattgtgtattaaatacattgaaaattg 112543  T
Q  136 taatagttgactttttaaaagaatagttgctaaattta 173  Q
    ||  ||||||||||| ||||||||| || |||| ||||    
T  112544 tatcagttgacttttcaaaagaataattactaatttta 112581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 15720183 - 15720079
Alignment:
Q  68 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgcta 167  Q
    ||||||||||| ||||||||   ||||||| || ||||||||||||| | | | |  |||||||||| ||||||||||||||||||||||||| ||| ||    
T  15720183 acactctttaaacactttaattagtaagttctttatgaaaagttgtgtattaagttcattggaaattgtaatagttgactttttaaaagaataattgata 15720084  T
Q  168 aattt 172  Q
    |||||    
T  15720083 aattt 15720079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 8208318 - 8208203
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| || ||||   ||||||||| ||| ||||| | ||||||||  |||||||||| || |||||||| |||  ||||| ||||| |||    
T  8208318 aaatgttaacgagtgcttccggagtactctttaaacacattaaatgataagttttatatgaaaagttatgtaatgaatgcattaaaaattgtaataattg 8208219  T
Q  145 actttttaaaagaata 160  Q
    ||||||||||||||||    
T  8208218 actttttaaaagaata 8208203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 2918587 - 2918675
Alignment:
Q  69 cactctttaagcactttaaaaggtaag-tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgac-tttttaaaa 155  Q
    ||||||||||||| ||||||  ||||  ||||||||||||||||||| | | |||| |||||||||||||||||||||| |||||||||    
T  2918587 cactctttaagcattttaaattgtaaaatttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgacatttttaaaa 2918675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 34899099 - 34899218
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| | || ||| |||||||||| |||||||||  ||||||||| ||||||||||| |  | | |||| ||| |||||| ||||    
T  34899099 aagggaaatgttaacgagtgcaccaggg-cactctttaaacactttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaat 34899197  T
Q  140 agttgactttttaaaagaata 160  Q
    | ||| |||||||||||||||    
T  34899198 aattgtctttttaaaagaata 34899218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 7968511 - 7968460
Alignment:
Q  63 ccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 114  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  7968511 ccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtg 7968460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 40530448 - 40530527
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 170  Q
    |||||||||||||||| ||||||| | |||||||||| |||||| | |||||| ||||||||||| |||| || ||||||    
T  40530448 gtaagtttttaatgaatagttgtgtattgaatgaattagaaattgtgatagttaactttttaaaataataattactaaat 40530527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 5815036 - 5815166
Alignment:
Q  43 gaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagt 142  Q
    |||||||||||||||| ||   ||| |||||||||||||||| ||   ||||||||||||||||||| |||    |||||| |||||||||| |  ||||    
T  5815036 gaaaatgttaacgagtgcttttggggcactctttaagcacttaaagcagtaagtttttaatgaaaagatgtatgttgaatgtattggaaattgtggtagt 5815135  T
Q  143 tgactttttaaaagaatagttgctaaattta 173  Q
    | | |||||||| ||||| || |||||||||    
T  5815136 taaatttttaaatgaataattactaaattta 5815166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 13480159 - 13480060
Alignment:
Q  45 aaatgttaacgagttctcccgg-gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||| |||| | |||| |||||||||||| |||||||||   ||| |||||||| |||  ||||| | |||||| |||| ||||||||||||||    
T  13480159 aaatgttaacaagtttttccggtgacactctttaaccactttaaataataaatttttaataaaatattgtgtattgaatgcattgaaaattataatagtt 13480060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 31672550 - 31672495
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 100  Q
    |||||||||||||| | |||||| |||||||||||  ||||||||||||| |||||    
T  31672550 aaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaacttttt 31672495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 39558764 - 39558859
Alignment:
Q  75 ttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 170  Q
    ||||||| ||||||  ||||||||||| |||||||| ||| |   |||| |||||||||| ||| |||||| |||||||| ||||| || ||||||    
T  39558764 ttaagcattttaaatagtaagtttttattgaaaagtcgtgtatcaaatgcattggaaattgtaacagttgaatttttaaatgaataattactaaat 39558859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 5758709 - 5758644
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttta 101  Q
    |||||||| ||||  |||||||| | |||||| |||| |||||| |||||||| ||||||||||||    
T  5758709 ttttaagggaaatactaacgagtgcccccggggcactttttaaggactttaaatggtaagttttta 5758644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 23117221 - 23117321
Alignment:
Q  72 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 171  Q
    ||||||| || ||||||  |||||||||||||||||| || || | | |||| |||||||||| |||| ||| || ||| |||||||||  |||||||||    
T  23117221 tctttaatcattttaaatagtaagtttttaatgaaaaattatgtattaaatgtattggaaattgtaattgttaac-tttaaaaagaataactgctaaatt 23117319  T
Q  172 ta 173  Q
    ||    
T  23117320 ta 23117321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 29342462 - 29342401
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttt 100  Q
    ||||| |||||||||||||| | |||||| |||| ||||||  ||||||||||||| |||||    
T  29342462 taagggaaatgttaacgagtgcccccggggcactttttaagacctttaaaaggtaacttttt 29342401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 27801187 - 27801322
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    ||||| |||||||||||||| |||  |||  |||||||||||||||||||  ||||||||||||| |||||||||| |||||||| |||| ||||| |||    
T  27801187 taagggaaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaa 27801286  T
Q  139 tagttgactttttaaaagaatagttgctaaatttag 174  Q
    |||||||||||||||||||||| || ||||||||||    
T  27801287 tagttgactttttaaaagaataattactaaatttag 27801322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 4384094 - 4384232
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    |||| ||| ||| ||||||||||  || ||||||||||||||||||||||||| | ||| |||||||||||| |||||| | |||||| ||||||||||     
T  4384094 tttttagggaaacgttaacgagtgttctcgggacactctttaagcactttaaatgataaatttttaatgaaa-gttgtgtattgaatgcattggaaattg 4384192  T
Q  136 taatagttgactttttaaaagaatagttgctaaatttagg 175  Q
    |||||||||| |||||||||||||| || |||||||||||    
T  4384193 taatagttgattttttaaaagaataattactaaatttagg 4384232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 42636333 - 42636460
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||||||||| | | |||| |||| ||||| |||||||||    
T  42636333 aaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaatagttg 42636432  T
Q  145 actttttaaaagaatagttgctaaattt 172  Q
    |||||||  || |||| || ||||||||    
T  42636433 acttttttgaataataattactaaattt 42636460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 28207770 - 28207636
Alignment:
Q  38 ttaaggaaaatgttaacgagttctcccgggacactctttaagcac-tttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattat 136  Q
    |||||| ||||||||||||||  ||||   ||||||||||||||| |||||| || |||||||||||||||||||||| | |||||| |||||||||| |    
T  28207770 ttaagggaaatgttaacgagta-tccccttacactctttaagcacctttaaatggaaagtttttaatgaaaagttgtgtattgaatgcattggaaattgt 28207672  T
Q  137 aatagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||||||||||||||||  ||| |||||||    
T  28207671 aatagttgactttttaaaagaattattgttaaattt 28207636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 1369818 - 1369957
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    ||||||||||| ||||||| ||| || || ||||||||||||||||||||||    ||||||||  |||||||||| |  | |||||| ||||||||||     
T  1369818 ttttaaggaaa-tgttaacaagtgcttcctggacactctttaagcactttaattaataagttttatatgaaaagttatctattgaatgcattggaaattg 1369916  T
Q  136 taatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    | ||||||||||||||||||||||| |||||||||||||||    
T  1369917 tgatagttgactttttaaaagaataattgctaaatttagga 1369957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 33013183 - 33013057
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| |||| ||| |||||||||||||||||||   ||||||| || ||||||||||||| | ||| |  |||||||||| |||||||||    
T  33013183 aaatgttaacgagtgctcctggg-cactctttaagcactttaattagtaagttctttatgaaaagttgtgtattgagtacattggaaattgtaatagttg 33013085  T
Q  145 actttttaaaagaatagttgctaaattt 172  Q
    |||||||||||||||| ||| |||||||    
T  33013084 actttttaaaagaataattgttaaattt 33013057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 3146158 - 3146050
Alignment:
Q  66 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgc----aatgaatgaattggaaattataatagttgactttttaaaagaatag 161  Q
    |||||||||||||||||||||||  ||||||||||||||||| | |||||    |||||||| |||||||||| |||||||| ||||||||||||||||     
T  3146158 ggacactctttaagcactttaaatagtaagtttttaatgaaacggtgtgcattgaatgaatgcattggaaattgtaatagttaactttttaaaagaataa 3146059  T
Q  162 ttgctaaat 170  Q
    || ||||||    
T  3146058 ttactaaat 3146050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 1135276 - 1135174
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||  | |||||  |||| ||||| ||||||||||||||||||||||||| || ||||    
T  1135276 cactctttaaacactttaaatggtaagtttttaaggaaaagttgtatattgaatacattgaaaattgtaatagttgactttttaaaagaataattactaa 1135177  T
Q  169 att 171  Q
    |||    
T  1135176 att 1135174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 2258049 - 2258173
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    |||| |||||||||||| ||||| | ||||||||| ||||||||||||||||| |||||||||| |||||||||||||| | | |||  |||  |||||     
T  2258049 tttttaggaaaatgttatcgagtgcacccgggacaatctttaagcactttaaatggtaagttttaaatgaaaagttgtgtattaaatacattaaaaattg 2258148  T
Q  136 taatagttgactttttaaaagaata 160  Q
    ||||  || ||||||||||||||||    
T  2258149 taatgattaactttttaaaagaata 2258173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 167857 - 167926
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||||||| ||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||    
T  167857 gtaagttttaaatgaaaagttatgtaataaatgcattggaaattataatagttgactttttaaaagaata 167926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 33949534 - 33949645
Alignment:
Q  62 cccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatag 161  Q
    |||| |||||||||||| ||||||||   ||||||| || ||||||||||||| | ||| || ||| |||||| |||||||||| ||||||||| ||||     
T  33949534 cccgagacactctttaaacactttaattagtaagttatttatgaaaagttgtgtattgagtgcatttgaaattgtaatagttgaatttttaaaacaatac 33949633  T
Q  162 ttgctaaattta 173  Q
    || |||||||||    
T  33949634 ttactaaattta 33949645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 2888729 - 2888812
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaat----tggaaattataatagttgactttttaaaagaatagttgctaaat 170  Q
    ||||||||||||||||| |||||||| |||||||||    ||||||||||||||||| ||||||||||| |||| || ||||||    
T  2888729 gtaagtttttaatgaaacgttgtgcattgaatgaatgcattggaaattataatagttaactttttaaaaaaataattactaaat 2888812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 35902041 - 35901955
Alignment:
Q  74 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||| ||||||   |||||||||||||||||||| || | |||||| |||||||||| ||||| |||||||||||||| ||||    
T  35902041 tttaagcattttaaataataagtttttaatgaaaagttctgtattgaatgcattggaaattgtaataattgactttttaaaaaaata 35901955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 12954876 - 12954740
Alignment:
Q  36 ttttaaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 134  Q
    ||||| ||||||||||||||||| ||||| | ||||||||||| | |||||||| | ||| |||||| |||||| ||||| | | |||  |||| |||||    
T  12954876 ttttatggaaaatgttaacgagtgtctcc-gagacactctttatgtactttaaatgataaatttttattgaaaaattgtgtattaaatctattgaaaatt 12954778  T
Q  135 ataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||||| |||| |||| |||| || ||||||||    
T  12954777 ataatagttgatttttaaaaaaaataattactaaattt 12954740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 37427329 - 37427200
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| |  |||| ||||||||||||||||||||| |||||| |||||||||||||||| | | ||| |  |||| ||||| ||||| |||    
T  37427329 aaatgttaacgagtgcctccgg-acactctttaagcactttaaatggtaagattttaatgaaaagttgagtattgattacattgaaaattgtaataattg 37427231  T
Q  145 a---ctttttaaaagaatagttgctaaattt 172  Q
    |    |||||||||||||| || ||||||||    
T  37427230 atttttttttaaaagaataattactaaattt 37427200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 45197530 - 45197399
Alignment:
Q  31 taatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattgga 130  Q
    |||| ||||| || |||||||||||||| |  || ||||||||||||| ||| |||||  |||| ||||| ||||||||||| | ||| |||  |||| |    
T  45197530 taattttttatgggaaatgttaacgagtgcctccaggacactctttaaacacattaaatagtaaattttttatgaaaagttgggtaatcaatccattgaa 45197431  T
Q  131 aattataatagttgactttttaaaagaatagt 162  Q
    ||||  ||| |||||||||||||| |||||||    
T  45197430 aattgcaattgttgactttttaaaggaatagt 45197399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 36355944 - 36356022
Alignment:
Q  65 gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||| | | |||| ||| ||||||  |||||||    
T  36355944 gggacactatttaagtactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattagaaattgcaatagtt 36356022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 12829835 - 12829953
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| |||||   ||||| ||||||||||||||| ||||||||||||||||||| || |  | |||||| ||||  |||| ||||    
T  12829835 aagggaaatgttaacgagtgctcccaa-acact-tttaagcactttaaatggtaagtttttaatgaaaaattatatattgaatgcattgttaattgtaat 12829932  T
Q  140 agttgactttttaaaagaata 160  Q
    | | |||||||||||| ||||    
T  12829933 aatagactttttaaaataata 12829953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 5589043 - 5588984
Alignment:
Q  101 aatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||| || || ||| |||| |||| |||||||||||||||||||||||||||||||    
T  5589043 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaata 5588984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 17081394 - 17081465
Alignment:
Q  101 aatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||||||||| | | || ||| |||||| |||||||||||||||| ||| |||| |||||||||||    
T  17081394 aatgaaaagttgtgcattcattgcattagaaattgtaatagttgacttttttaaaaaataattgctaaattt 17081465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 26750694 - 26750611
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatg 123  Q
    |||| |||||||||||||| | | |||  ||||||||||||||||||||  ||||| |||||||||||| || |||| ||||||    
T  26750694 aagggaaatgttaacgagtgcgctcggagcactctttaagcactttaaatagtaagattttaatgaaaaattatgcattgaatg 26750611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 9735263 - 9735400
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    ||||| |||||||||||||||||  | | | |||||| |||||  | |||||| | ||| ||||||||||||||||||| | | |||| |||| || | |    
T  9735263 ttttatggaaaatgttaacgagtgtttc-gagacactttttaaatattttaaatgataaatttttaatgaaaagttgtgtattaaatgtattgaaagtca 9735361  T
Q  136 taatagttgactttttaaaagaatagttgctaaatttag 174  Q
    |||||||||||||||| ||| |||| ||  |||||||||    
T  9735362 taatagttgacttttttaaaaaataattattaaatttag 9735400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 12684490 - 12684576
Alignment:
Q  74 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||||||||   ||| |||||||| ||||||| || |||||||| ||| |||||| |||||||||| | ||| ||||||||    
T  12684490 tttaagcactttaaataataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagttgattctttgaaagaata 12684576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 24695856 - 24695760
Alignment:
Q  74 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 171  Q
    ||||| |||||||||  ||||||||| ||| |||||||||| | | | || ||| |||||| |||||||||||||||||||| |||| || |||||||    
T  24695856 tttaaacactttaaatagtaagtttt-aataaaaagttgtgtattcactgcattagaaattgtaatagttgactttttaaaataataattactaaatt 24695760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 3463565 - 3463501
Alignment:
Q  37 tttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagttttta 101  Q
    |||||||||||||||||||  | ||| ||| ||||||||||||||||  ||| ||||||||||||    
T  3463565 tttaaggaaaatgttaacggatgctctcggaacactctttaagcactcaaaatggtaagttttta 3463501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 3520822 - 3520890
Alignment:
Q  92 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||||||||||||| || | |||||| |||  ||| | |||||||||| ||||||||||||||    
T  3520822 taagtttttaatgaaaagttatgtattgaatgcattaaaaactgtaatagttgattttttaaaagaata 3520890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 37813426 - 37813497
Alignment:
Q  102 atgaaaagttgtgcaatgaatgaattggaaattataatagttgac-tttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||| | | |||| |||||||||| |||| |||||| |||||||||||||| || ||||||||    
T  37813426 atgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttttaaaagaataattactaaattt 37813497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 884532 - 884486
Alignment:
Q  68 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 114  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||    
T  884532 acactctttaagcactttaaattgaaagtttttaatgaaaaattgtg 884486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 12545034 - 12544988
Alignment:
Q  130 aaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    |||||||||||||||||||||| ||| |||| || ||||||||||||    
T  12545034 aaattataatagttgactttttgaaataataattactaaatttagga 12544988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 16723169 - 16723222
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggta 93  Q
    |||| |||||||||||||| | |||| |||||| ||||||||||||||| ||||    
T  16723169 aagggaaatgttaacgagtgcccccgagacactttttaagcactttaaatggta 16723222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 33067595 - 33067531
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaa 155  Q
    ||||||||| ||||||||||| || | |||||| ||| || ||| ||||| ||||||||||||||    
T  33067595 gtaagttttaaatgaaaagttttgtattgaatgcattagacattgtaataattgactttttaaaa 33067531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 47187785 - 47187915
Alignment:
Q  41 aggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataata 140  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||| ||| ||||||||||||||||||| || || | |||||| ||||||||||||||||    
T  47187785 aggaaaatgttaacgagta-tcccgtgacactctttaaacacttaaaatggtaagtttttaatgaaaaattatgtattgaatgcattggaaattataata 47187883  T
Q  141 gttgactttttaaaagaatagttgctaaattt 172  Q
    ||||| |||||||| ||||| || ||||||||    
T  47187884 gttgattttttaaatgaataattactaaattt 47187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 2864285 - 2864172
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| | |||||  ||||||||||||||||||||  |||||||||||||||||||||||| | |||||| |||||||||| ||||    
T  2864285 aagggaaatgttaacgagtgc-cccggagcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaat 2864187  T
Q  140 agttgactttttaaa 154  Q
    |||||||||||||||    
T  2864186 agttgactttttaaa 2864172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 38748683 - 38748815
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    ||||| |||||||||||||| | ||| || |||||||||||||||||||   ||||||| || ||||||||||||| | ||| || |||| |||||||||    
T  38748683 taagggaaatgttaacgagtgcccccagg-cactctttaagcactttaattagtaagttatttatgaaaagttgtgtattgagtgcattgaaaattataa 38748781  T
Q  139 tagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||||||||||||||| || ||||||||    
T  38748782 tagttgactttttaaaagaataatttctaaattt 38748815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 43396976 - 43397092
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    ||||| |||||||||||||| | | |||  ||||| |||| |||||||||  |||||||||||||||||||||||| | | |||| ||||||||||||||    
T  43396976 taagggaaatgttaacgagtgccctcggcgcactcgttaaacactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataa 43397075  T
Q  139 tagttgactttttaaaa 155  Q
    |||||||||||||||||    
T  43397076 tagttgactttttaaaa 43397092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 45640685 - 45640559
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    ||||||||||||||   |||| ||||||||||||||| ||||||  |||||||||| ||||||| ||||| |||||||| |||| ||||||||||| |||    
T  45640685 aaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaagtttttgatgaaaa-ttgtgtaatgaatgcattgaaaattataataattg 45640587  T
Q  145 actttttaaaagaatagttgctaaattt 172  Q
    ||||||| |||||||||||  |||||||    
T  45640586 actttttgaaagaatagttcttaaattt 45640559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 39150697 - 39150590
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    |||||||||||||||||||   ||||| |||||||||||| || || | |||||| |||| ||||| ||||||||||||||||| ||||||| || ||||    
T  39150697 cactctttaagcactttaactagtaagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaa 39150598  T
Q  169 atttagga 176  Q
    ||||||||    
T  39150597 atttagga 39150590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 34409872 - 34409773
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    |||||||||||||| || | |||||| |||||| |||||||||| |||||||||||||||||||  |||| | |||||| |||||||||||||||| |||    
T  34409872 aaatgttaacgagtgcttctgggacattctttatgcactttaaatggtaagtttttaatgaaaa-atgtgtattgaatgcattggaaattataataattg 34409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 44829415 - 44829284
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||| |||||||||  | ||||||||||||||||| |||||||  |||||||||| ||| |||||||||| | |||||| |||  ||||| ||||    
T  44829415 aagggaaatattaacgagtgtttccgggacactctttaagtactttaatcggtaagtttt-aataaaaagttgtgtattgaatgtattaaaaattgtaat 44829317  T
Q  140 agttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||| |||| |||||||| || ||||||||    
T  44829316 agttgacctttttaaagaataattactaaattt 44829284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 44329745 - 44329620
Alignment:
Q  35 gttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatt 134  Q
    ||||| ||| ||||||||||||||  | ||  |||| ||||||| |||||||||  | ||||||||| | |||| || || | |||||| |||| |||||    
T  44329745 gttttgagggaaatgttaacgagtgtttccacgacattctttaaacactttaaatagaaagtttttagtaaaaaattatgtattgaatgcattgaaaatt 44329646  T
Q  135 ataatagttgactttttaaaagaata 160  Q
    ||||||||||||||||||||||||||    
T  44329645 ataatagttgactttttaaaagaata 44329620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 14746160 - 14746294
Alignment:
Q  38 ttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 137  Q
    ||||||||||||||||||||| | |||| | ||||||| |||||||||||   ||||||| |  ||||||||||||| | | |  | |||| ||||||||    
T  14746160 ttaaggaaaatgttaacgagtgcccccgaggcactcttcaagcactttaattagtaagttctatatgaaaagttgtgtattcatagcattgaaaattata 14746259  T
Q  138 atagttgactttttaaaagaatagttgctaaattt 172  Q
    | |||||| ||||||| | |||| |||||||||||    
T  14746260 acagttgattttttaagaaaataattgctaaattt 14746294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 34232672 - 34232805
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaa-aggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 137  Q
    ||||| |||||||||||||| | | ||| ||||||||||||||| ||||| || | | |||||||     ||||||| | |||| | |||| ||||| ||    
T  34232672 taagggaaatgttaacgagtgccctcggaacactctttaagcaccttaaatagttgactttttaa-----agttgtgtattgaaagcattgaaaattgta 34232766  T
Q  138 atagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  34232767 atagttgactttttaaaagaataattgctaaattaagga 34232805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 8794504 - 8794424
Alignment:
Q  96 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||| || |||||||||| |  || || |||| ||||||||||||||||||||||||||||||| || ||||||||||||    
T  8794504 ttttttataaaaagttgtgtatggagtgcattgaaaattataatagttgactttttaaaagaataattactaaatttagga 8794424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 31889278 - 31889186
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatg-aaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||| | | |||| ||| |||||  ||||||||||||||| |||| ||||    
T  31889278 cactctttaagcattttaaatggtaagtttttaatgaaaaagttgtgtattaaatgcattagaaatcgtaatagttgacttttaaaaaaaata 31889186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 39156380 - 39156273
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaag----ttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttg 164  Q
    |||| ||||| ||||||||| ||||| |||||||| ||||     ||||| | |||||| |||||||||| || |||||||||||||||||||||| ||     
T  39156380 cactttttaaacactttaaatggtaaatttttaataaaaaaaaaattgtgtattgaatgcattggaaattgtagtagttgactttttaaaagaataatta 39156281  T
Q  165 ctaaattt 172  Q
    ||||||||    
T  39156280 ctaaattt 39156273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 7212885 - 7212785
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgct 166  Q
    |||||||||||| |||||||||  ||||||||| ||| ||||||||     |||||| |||||||||| |||| ||| |||||||||||| ||| || ||    
T  7212885 gacactctttaaacactttaaattgtaagttttaaataaaaagttg-----tgaatgcattggaaattgtaattgttaactttttaaaagtataattact 7212791  T
Q  167 aaattt 172  Q
    ||||||    
T  7212790 aaattt 7212785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 604444 - 604508
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaa 155  Q
    ||||||| |||||||||| ||||| | ||| || |||||||||||||||| ||||||||||||||    
T  604444 gtaagttcttaatgaaaaattgtgtattgagtgcattggaaattataataattgactttttaaaa 604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 17552972 - 17552843
Alignment:
Q  43 gaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagt 142  Q
    |||||||||||||||| || | ||  | ||||||||| |||||||||||| |||||||||  |||| ||||  | | |||  |||  |||||||||||||    
T  17552972 gaaaatgttaacgagtgcttcagg--ctctctttaagtactttaaaaggtcagtttttaacaaaaaattgtatattaaatacattaaaaattataatagt 17552875  T
Q  143 tgactttttaaaagaatagttgctaaatttag 174  Q
    ||||||||||||| |||| ||  |||||||||    
T  17552874 tgactttttaaaaaaataattattaaatttag 17552843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 38491309 - 38491233
Alignment:
Q  96 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||| ||||| | |||||| |||| ||||| |||||||||||||||||| | |||| || ||||||||    
T  38491309 tttttaatgaaaaattgtgtattgaatgcattgtaaattgtaatagttgactttttaacataataattactaaattt 38491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 4851232 - 4851321
Alignment:
Q  65 gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaa 154  Q
    |||| ||||||||||||||||||   ||||||| || ||||||||||| | | | | || ||| |||||| |||||||||||||||||||    
T  4851232 gggatactctttaagcactttaattagtaagttctttatgaaaagttgggtagtaagtgcatttgaaattgtaatagttgactttttaaa 4851321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 44329581 - 44329488
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||||||||||||||||||||    || |||||||| ||||||| |  | | |||| | || ||||||||||| |||||||||||||||||||    
T  44329581 gacactctttaagcactttaaatataaaatttttaataaaaagttatatattaaatgcactgaaaattataataattgactttttaaaagaata 44329488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 40460725 - 40460805
Alignment:
Q  80 cactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||  |||||||||||||||||| ||||  | ||||| ||||||||| | ||||| |||| |||||||| |||||    
T  40460725 cactttaaatagtaagtttttaatgaaaaattgtatattgaataaattggaaactgtaataattgattttttaaatgaata 40460805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 2994940 - 2995065
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    ||||||||||| || | ||||| || || ||||| |||||||||  ||||||||||| | |||||||||| | | |   ||||| ||||||||||||||     
T  2994940 aaatgttaacgcgtgcccccggcactct-tttaaacactttaaatagtaagttttta-taaaaagttgtgtatttacaaaattgaaaattataatagttt 2995037  T
Q  145 actttttaaaagaatagttgctaaattt 172  Q
    ||||||||||| |||| || ||||||||    
T  2995038 actttttaaaataataattactaaattt 2995065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 36563814 - 36563730
Alignment:
Q  72 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaa 158  Q
    ||||||| ||||||||| |  |||||||| ||||||| ||||| | | |||| |||| ||||||||||||||||| |||| ||||||    
T  36563814 tctttaaacactttaaatg--aagttttttatgaaaaattgtgtatttaatgcattgaaaattataatagttgacgttttgaaagaa 36563730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 3982408 - 3982277
Alignment:
Q  40 aaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    |||| |||||||||||||| ||||| | | |||||||||| |||||||||  |||| |||||| | |||||||||  | | |||| |||  |||||||||    
T  3982408 aagggaaatgttaacgagtgtctccggtg-cactctttaaacactttaaatagtaaatttttatt-aaaagttgtctattcaatgcattataaattataa 3982311  T
Q  139 tagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||||||  || |||| || ||||||||    
T  3982310 tagttgactttttctaaaaataattactaaattt 3982277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 8365596 - 8365511
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||||||||| |||||| |  || | |||||| |||| | ||| |||||||||| |||||||||||||| ||  |||||||||||    
T  8365596 gtaagtttttattgaaaaatgatgtattgaatgcattgaagattgtaatagttgattttttaaaagaataattattaaatttagga 8365511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 26811258 - 26811330
Alignment:
Q  104 gaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||||||||  | || ||| |||||||||| |||||||| | |||||||||||||| || |||||| |||||    
T  26811258 gaaaagttgtatattgtatgtattggaaattctaatagttaattttttaaaagaataattactaaatatagga 26811330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 9448945 - 9449047
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||| | |||||| |||| |||||||||||||||| |||||||||||||| || ||||    
T  9448945 cactctttaaacactttaaatggtaagtttttaatgaaaagttgtgtattgaatgtattgaaaattataatagttga-tttttaaaagaataattactaa 9449043  T
Q  169 attt 172  Q
    ||||    
T  9449044 attt 9449047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 19890177 - 19890287
Alignment:
Q  66 ggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgc 165  Q
    ||||| ||||||||||||| |||   ||||||||||||||||||||||| | | |||| |||||||||| ||||||||||||||||||||||||| || |    
T  19890177 ggacattctttaagcacttaaaataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattac 19890276  T
Q  166 taaatttagga 176  Q
    |||||||||||    
T  19890277 taaatttagga 19890287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 41933285 - 41933143
Alignment:
Q  30 ttaatgttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattgg 129  Q
    ||||| ||||| ||||||| |||||||||  ||||||  |||||||||||||||||||   |||| ||||| || |||||||||  | ||| || ||||     
T  41933285 ttaattttttatggaaaatattaacgagtgttcccggagcactctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattga 41933186  T
Q  130 aaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  41933185 aaattgtaatagttgactttttaaaagaataattgctaaattt 41933143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 1334847 - 1334966
Alignment:
Q  41 aggaaaatgttaacgagttctcccggga-cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||||||||||||||| || |||| ||| |||||||||||||||||||| | ||||||||||||||||| ||||  | |||||| |||||||||| ||||    
T  1334847 aggaaaatgttaacga-ttgtccccggagcactctttaagcactttaaatgataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaat 1334945  T
Q  140 agttgactttttaaaagaata 160  Q
    |||||| ||||| ||||||||    
T  1334946 agttgatttttttaaagaata 1334966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 31452314 - 31452437
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    ||||||||||||||  |||||| ||| | |||||||||||||||  ||||||||||||| |||||||||| | |||||| |||| ||||| |||| ||||    
T  31452314 aaatgttaacgagtgttcccggaacattatttaagcactttaaatagtaagtttttaat-aaaagttgtgtattgaatgcattgaaaattgtaattgttg 31452412  T
Q  145 actttttaaaagaatagttgctaaa 169  Q
    |||||||||||||||| || |||||    
T  31452413 actttttaaaagaataattactaaa 31452437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 31017271 - 31017402
Alignment:
Q  41 aggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataata 140  Q
    |||||||||||||||||| |   |||| || ||||||||||||||||| |  |||||||||||||||||||||| | | |||| |||| |||||| ||||    
T  31017271 aggaaaatgttaacgagtgccttcggggcattctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaattaaaata 31017370  T
Q  141 gttgactttttaaaagaatagttgctaaattt 172  Q
     |||||||||| |||||||| || ||||||||    
T  31017371 tttgacttttttaaagaataattactaaattt 31017402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 19514986 - 19514879
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    ||||||||||||||||||||  |||||||||  ||||||||||||  | | | || ||||  |||||||||||||||||||| ||||||||| ||| |||    
T  19514986 cactctttaagcactttaaattgtaagttttatatgaaaagttgtatattcattgcattgataattataatagttgacttttaaaaagaataattgttaa 19514887  T
Q  169 atttagga 176  Q
    ||||||||    
T  19514886 atttagga 19514879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 34904752 - 34904928
Alignment:
Q  42 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 141  Q
    ||||||||| ||||||| || ||||  ||||||||||||||||||||  ||||||| |||||||||| || || | | |||  |||  ||||| ||||||    
T  34904752 ggaaaatgtcaacgagtgcttccggagcactctttaagcactttaaattgtaagttattaatgaaaaattttgtattaaattcattaaaaattgtaatag 34904851  T
Q  142 ttgactttttaaaagaatagttgctaaa----------tttaggagtgccccgagagcactcgttaacaagacccat 208  Q
    |||| |||||||||||||| || |||||          || | |||||||| |||||||||||||||||||||||||    
T  34904852 ttgattttttaaaagaataattactaaatatgagatacttaaagagtgcccagagagcactcgttaacaagacccat 34904928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 15505687 - 15505568
Alignment:
Q  41 aggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||||||||||||||||| ||||   || ||||||| || |||||||||  ||||||||  |||||||||||||| | |||||| |||| ||||||||||    
T  15505687 aggaaaatgttaacgagtgtctctgtgg-cactcttgaaacactttaaatagtaagtttggaatgaaaagttgtgtattgaatgtattgaaaattataat 15505589  T
Q  140 agttgactttttaaaagaata 160  Q
    |||| ||||||| ||||||||    
T  15505588 agtttactttttgaaagaata 15505568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 4762464 - 4762361
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    |||| ||||| |||||||||  |||| |||||||| |||| ||||| | |||||| |||| |||||||||||||||||||| ||||| |||| || ||||    
T  4762464 cactttttaatcactttaaatagtaaatttttaataaaaaattgtgtattgaatgcattgaaaattataatagttgactttataaaataataattactaa 4762365  T
Q  169 attt 172  Q
    ||||    
T  4762364 attt 4762361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 29239235 - 29239326
Alignment:
Q  64 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaa 155  Q
    ||||||||||||||||||||||||   |||| | ||||||||||| | ||| | |||||| |||| ||||| ||||||||||||||||||||    
T  29239235 cgggacactctttaagcactttaattagtaaatctttaatgaaaaatggtgtattgaatgcattgaaaattgtaatagttgactttttaaaa 29239326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 7673286 - 7673202
Alignment:
Q  92 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||||||  || |||||||||| | | |||| |||| ||||| ||||||||||||||| || |||||| |||||||||||||||    
T  7673286 taagttttatataaaaagttgtgtactaaatgtattgaaaattgtaatagttgacttttaaagagaataattgctaaatttagga 7673202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 9173696 - 9173803
Alignment:
Q  68 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaat-gaatgaattggaaattataatagttgactttttaaaagaatagttgct 166  Q
    ||||||||||| ||||||||   | |||||||| ||||||| ||||| | | || || |||| ||||| |||||||||| ||||||||| |||| |||||    
T  9173696 acactctttaaacactttaattagcaagttttttatgaaaaattgtgtatttgattgtattgaaaattgtaatagttgattttttaaaaaaataattgct 9173795  T
Q  167 aaatttag 174  Q
    ||||||||    
T  9173796 aaatttag 9173803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 20065020 - 20064919
Alignment:
Q  74 tttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattta 173  Q
    |||||||||||||||  | ||| ||||| |||||| ||||| | | |||  |||| ||||| ||||||||||||||||||||||||| || ||| |||||    
T  20065020 tttaagcactttaaatagaaaggtttta-tgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataattactatattta 20064922  T
Q  174 gga 176  Q
    |||    
T  20064921 gga 20064919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 38533864 - 38533962
Alignment:
Q  73 ctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||| || |||  |||||||| ||| ||||| ||||| | |||||| ||| ||||||| ||||||||||| ||||||| |||| || ||||||||    
T  38533864 ctttaagcatttgaaatagtaagtttgtaaagaaaaattgtgtattgaatgcattagaaattacaatagttgactatttaaaa-aataattactaaattt 38533962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 37993190 - 37993088
Alignment:
Q  72 tctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatt 171  Q
    ||||||| || ||||||  |||| |||||||| |||| || || | | |||| |||| ||||| |||||||||| ||||| |||||||||||  ||||||    
T  37993190 tctttaaacattttaaatagtaaatttttaataaaaaattatgtattaaatgcattgaaaattgtaatagttgattttttgaaagaatagttattaaatt 37993091  T
Q  172 tag 174  Q
    |||    
T  37993090 tag 37993088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 41551425 - 41551385
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaag 79  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  41551425 taaggaaaatgttaacgagtgcccccggggcactctttaag 41551385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 43228867 - 43228919
Alignment:
Q  120 aatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||  ||||||||||| || |||||||||| ||||| |||||||||||    
T  43228867 aatgaattaaaaattataataattaactttttaaaggaataattgctaaattt 43228919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 51351396 - 51351287
Alignment:
Q  65 gggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttg 164  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||| | | |||| |||||||||||||||| |  |||||||||||||||| ||     
T  51351396 gggacactctttaagcactttaaaaagtaagtttttaatgaaaaattgtgtattaaatgtattggaaattataatactaaactttttaaaagaataatta 51351297  T
Q  165 ctaaatttag 174  Q
     |||||||||    
T  51351296 ttaaatttag 51351287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 29083866 - 29083998
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaag-gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||||||| |  || ||| ||||||||||||||||||||  ||||||||||| |||||||||||| | | |||| |||  ||||| ||||||||    
T  29083866 aaatgttaacgagtgcctccaggatactctttaagcactttaaaatagtaagtttttattgaaaagttgtgtattaaatgcattaaaaattgtaatagtt 29083965  T
Q  144 gactttttaaaagaatagttgctaaatttagga 176  Q
     |||||||||||||||| || |||| |||||||    
T  29083966 aactttttaaaagaataattactaagtttagga 29083998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 48180132 - 48180264
Alignment:
Q  39 taaggaaaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattata 137  Q
    ||||| |||||||||||| | ||||| || ||||||||| | |||||||||  |||||||||| |||||| |||| | ||  |||| |||||||||| ||    
T  48180132 taagggaaatgttaacgaatatctcc-ggaacactcttttatcactttaaatagtaagttttttatgaaatgttgggtaaccaatgcattggaaattgta 48180230  T
Q  138 atagttgactttttaaaagaatagttgctaaatt 171  Q
    ||||||||||||||||||||||| ||| ||||||    
T  48180231 atagttgactttttaaaagaataattgttaaatt 48180264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 42845977 - 42846104
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatg-aattggaaattataatagtt 143  Q
    ||||||||| |||| |||||  |||||||||||||     |||| | ||||||||||||||||||||||| | |||||| ||||| |||||  |||||||    
T  42845977 aaatgttaaggagtgctcccatgacactctttaag-----taaatgataagtttttaatgaaaagttgtgtattgaatgcaattgaaaattgaaatagtt 42846071  T
Q  144 gactttttaaaagaatagttgctaaatttagga 176  Q
    |||||||| |||||||| || ||||||||||||    
T  42846072 gactttttcaaagaataattactaaatttagga 42846104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 12086721 - 12086857
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    ||||| || |||||||||||||| | | ||||||||| |||||| |||  |||  ||||||||||||||||||  |||| | |||||| | || ||||||    
T  12086721 ttttatgggaaatgttaacgagtgccctcgggacactatttaagtactcgaaatagtaagtttttaatgaaaaaatgtgtattgaatgcactgaaaatta 12086820  T
Q  136 taatagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||| || ||||| ||||||||| || ||||||||    
T  12086821 taatagatgtcttttaaaaagaataattactaaattt 12086857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 40673543 - 40673458
Alignment:
Q  75 ttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||||||| | ||||||||||| ||||||| ||| | |||||  ||| |||||| |||||||||| ||||||||||||||    
T  40673543 ttaagcactttaaatgataagtttttaaagaaaagtagtgtattgaatatattagaaattgtaatagttgaatttttaaaagaata 40673458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 26900014 - 26900106
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgac-tttttaaaagaata 160  Q
    |||||||||| ||||||||| ||||| ||||  |||||||||| || ||| |||| |||| ||||| ||||||||||| ||||||||||||||    
T  26900014 cactctttaaacactttaaatggtaaattttatatgaaaagttatgtaataaatgcattgaaaattgtaatagttgacttttttaaaagaata 26900106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 39551814 - 39551949
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    |||||||| |||||||||||||| ||  | ||  ||||||||| ||||||||   ||||||| || ||||||||||||  | ||| || |||| |||||     
T  39551814 ttttaagggaaatgttaacgagtgctttcagggtactctttaaacactttaattagtaagttctttatgaaaagttgtttattgagtgtattgaaaattg 39551913  T
Q  136 taatagttgactttttaaaagaatagttgctaaattt 172  Q
    || ||||||| |||||||||||||| |||||||||||    
T  39551914 ta-tagttgattttttaaaagaataattgctaaattt 39551949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 22730509 - 22730568
Alignment:
Q  101 aatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||| || || ||| |||| |||| |||||||||||||||||||||||||||||||    
T  22730509 aatgaaaatttttgtaattaatgcattgaaaattataatagttgactttttaaaagaata 22730568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 24791588 - 24791526
Alignment:
Q  92 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaa 154  Q
    |||||||||||||||||||| || | |||||  |||| ||||| |||||||||||||||||||    
T  24791588 taagtttttaatgaaaagttatgtattgaatacattgaaaattgtaatagttgactttttaaa 24791526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 41309842 - 41309936
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaat---gaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||| | ||    |||| |||| ||||| ||||| || ||||||||||||||||    
T  41309842 cactctttaaacactttaaatgataagtttttaatgaaaaattgtactatatcaaatgcattgaaaattgtaataattaactttttaaaagaata 41309936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 8957755 - 8957697
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttt 99  Q
    ||||||||||||||||||| ||||| ||||||||||||||  |||||||| |||| ||||    
T  8957755 aaggaaaatgttaacgagtgctccc-ggacactctttaagatctttaaaaagtaactttt 8957697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 26143214 - 26143168
Alignment:
Q  68 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtg 114  Q
    ||||||||||| || |||||| ||||||||||||||||||| |||||    
T  26143214 acactctttaaacattttaaatggtaagtttttaatgaaaatttgtg 26143168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 42939925 - 42939856
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||||||| |||||||| ||||| | | |||  |||| |||||  ||||||||||||||||||||||||    
T  42939925 gtaagttttaaatgaaaaattgtgtattaaattcattgaaaattgcaatagttgactttttaaaagaata 42939856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 49362368 - 49362436
Alignment:
Q  92 taagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||||| |||| ||||  | | |||  |||||||||| |||||||| ||||||||||||||||    
T  49362368 taagtttttaataaaaaattgtatattaaatacattggaaattgtaatagttaactttttaaaagaata 49362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 30801886 - 30801766
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||||  | ||||||||||| |||||||||| | |||||| |||| |||||||||    
T  30801886 taaggaaaatgttaacgagtacccccgggacattctttaagcactttaaatagcaagtttttaattaaaagttgtgtattgaatgcattgaaaattataa 30801787  T
Q  139 tagttgactttttaaaagaat 159  Q
    || ||  ||||| ||||||||    
T  30801786 tacttagcttttcaaaagaat 30801766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 17215647 - 17215777
Alignment:
Q  42 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatag 141  Q
    ||||||||||||||||| |   |||  |||||||||||||||||||| |||||||||||||| |||| ||||  | |||||| |||| ||||| ||||||    
T  17215647 ggaaaatgttaacgagtgccttcggatcactctttaagcactttaaatggtaagtttttaataaaaaattgtttattgaatgcattgaaaattgtaatag 17215746  T
Q  142 ttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||||||| |||| || ||||||||    
T  17215747 ttgactttttaaaaaaataattactaaattt 17215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 31855174 - 31855078
Alignment:
Q  64 cgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||| |||||||||||||||||||  |||||||||||||||||| ||||  | |||||| |||||||||| |||||||||||||||||||| ||||    
T  31855174 cgggatactctttaagcactttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgactttttaaaataata 31855078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 9762939 - 9762828
Alignment:
Q  46 aatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaa-tgaaaagttgtgcaatgaatgaattggaaattataatagttg 144  Q
    ||||||||||||| |||| ||  |||||||||| ||||||||| ||||| ||||||| |||||||||||| | |||||| ||| |||||||||||| |||    
T  9762939 aatgttaacgagtgctccggg--cactctttaatcactttaaatggtaaatttttaaatgaaaagttgtgtactgaatgtattagaaattataataattg 9762842  T
Q  145 actttttaaaagaa 158  Q
    ||||||||||||||    
T  9762841 actttttaaaagaa 9762828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 32823821 - 32823701
Alignment:
Q  40 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataat 139  Q
    |||| |||||||||||||| |  ||||  ||||||||||||||||||||    |||||||||||||||||||||| | |||||| |||| ||||| ||||    
T  32823821 aagggaaatgttaacgagtgcctccggagcactctttaagcactttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaat 32823722  T
Q  140 agttgactttttaaaagaata 160  Q
    | ||||||||| |||||||||    
T  32823721 aattgacttttcaaaagaata 32823701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 1841084 - 1840994
Alignment:
Q  83 tttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattta 173  Q
    |||||| | |||||||||||| |||||||||| | |||||| |||||||||| |||||||||| |||||||||||||| ||  ||||||||    
T  1841084 tttaaatgataagtttttaattaaaagttgtgtattgaatgcattggaaattgtaatagttgattttttaaaagaataattattaaattta 1840994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 7421817 - 7421684
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    |||| |||||||||||||||  ||| | ||||||||||||||||||||||  ||||  ||||| | |||||||||| | | |||| |||| ||||| |||    
T  7421817 taagaaaaatgttaacgagtgttcctgtgacactctttaagcactttaaatagtaaagttttattaaaaagttgtgtattaaatgcattgaaaattgtaa 7421718  T
Q  139 tagttgactttttaaaagaatagttgctaaattt 172  Q
    || |||||||||||||  |||| || ||||||||    
T  7421717 tatttgactttttaaataaataattactaaattt 7421684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 23399226 - 23399121
Alignment:
Q  68 acactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgcta 167  Q
    |||||||||||| ||||||||   ||||||||  || ||||||| ||||| ||||  |||| |||||||||||||| |||||||||||||||| || |||    
T  23399226 acactctttaagtactttaaatattaagttttatattaaaagttatgcaacgaatacattgaaaattataatagttaactttttaaaagaataatttcta 23399127  T
Q  168 aattta 173  Q
    ||||||    
T  23399126 aattta 23399121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 28874539 - 28874410
Alignment:
Q  44 aaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    ||||||||||||||| |  |||||| | ||||||| || ||||||    |||||||||||||||| || || | |||||| |||||||||||||||||||    
T  28874539 aaaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagtt 28874440  T
Q  144 gactttttaaaagaatagttgctaaattta 173  Q
    || |||| ||||||||| || |||| ||||    
T  28874439 gatttttcaaaagaataattactaatttta 28874410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 27778900 - 27778762
Alignment:
Q  36 ttttaaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaatta 135  Q
    |||| ||||||||||||||| ||  | ||| | |||||||||||||||||||| ||||| |||||| |||||| | ||| | |||||| |||| ||||||    
T  27778900 tttttaggaaaatgttaacgtgtgtttccgag-cactctttaagcactttaaatggtaaattttta-tgaaaaat-gtgtattgaatgcattgaaaatta 27778804  T
Q  136 taatagttgacttttt-aaaagaatagttgctaaatttagga 176  Q
    |||| ||||||||||| |||| |||| || ||||||||||||    
T  27778803 taatcgttgactttttaaaaaaaataattactaaatttagga 27778762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 3766383 - 3766301
Alignment:
Q  78 agcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    ||||||||||| | ||||||||  |||||||||| || |||||||| |||  ||||| ||||| |||||||||||||||||||    
T  3766383 agcactttaaatgataagttttatatgaaaagttatgtaatgaatgtattataaattgtaataattgactttttaaaagaata 3766301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 19293446 - 19293551
Alignment:
Q  71 ctctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaat 170  Q
    |||||||||||||||||   ||| |||||| |||||||||||   | ||| || || ||||||| |||||||| ||||||||||| |||| ||| |||||    
T  19293446 ctctttaagcactttaattagtaggttttttatgaaaagttggttattgagtgcatcggaaattgtaatagttaactttttaaaataataattgttaaat 19293545  T
Q  171 ttagga 176  Q
    ||||||    
T  19293546 ttagga 19293551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 5446625 - 5446758
Alignment:
Q  39 taaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataa 138  Q
    ||||| |||||||||||||| | ||||| |||||||  | ||||||||||  | || |||||||| |||||| ||||| |||||| |||| ||||| |||    
T  5446625 taagggaaatgttaacgagtgcccccgg-acactctcga-gcactttaaatagcaattttttaattaaaagtggtgcattgaatgcattgaaaattgtaa 5446722  T
Q  139 tagttgactttttaaaagaatagttgctaaatttag 174  Q
     |||||||| || ||||||||| || |||| |||||    
T  5446723 cagttgactattcaaaagaataattactaattttag 5446758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 2865016 - 2864890
Alignment:
Q  45 aaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagt-ttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||| ||| | |||| |||||||||||| || |||||| ||||||| |||| ||||||| ||||| | | |||| |||| ||||| ||||||||    
T  2865016 aaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagttttttgatgaaaaattgtgtatttaatgcattgtaaattgtaatagtt 2864917  T
Q  144 gactttttaaaagaatagttgctaaattt 172  Q
       ||||| ||| |||| |||||||||||    
T  2864916 --atttttgaaaaaataattgctaaattt 2864890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 30739714 - 30739609
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    |||| |||||||| || ||| | ||| ||||||||||||| ||||| | |||||| |||||||||  ||  |||| ||||||||| |||||| || ||||    
T  30739714 cactttttaagcatttaaaatgataaatttttaatgaaaaattgtgtattgaatgcattggaaatcgtaccagttaactttttaatagaataattactaa 30739615  T
Q  169 atttag 174  Q
    ||||||    
T  30739614 atttag 30739609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 1479084 - 1479186
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    |||||||||||||||||||| ||||| ||||| ||| ||| ||||| | | |||| |||| ||||| | ||| ||| ||||||||||||||  || ||||    
T  1479084 cactctttaagcactttaaatggtaaattttt-atgtaaaattgtgtattcaatgcattgaaaattgtcataattgcctttttaaaagaatgattactaa 1479182  T
Q  169 attt 172  Q
    ||||    
T  1479183 attt 1479186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 2692477 - 2692524
Alignment:
Q  125 attggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    |||||||||| |||||||||||||||||||| |||| || ||||||||    
T  2692477 attggaaattgtaatagttgactttttaaaataataattactaaattt 2692524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 11720925 - 11720976
Alignment:
Q  125 attggaaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    |||| ||||| ||||||||||||| ||||||||||| ||| |||||||||||    
T  11720925 attgaaaattgtaatagttgacttcttaaaagaataattgttaaatttagga 11720976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 26669292 - 26669361
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||| |||||||||||||||| || | | |||  | || ||||| |||||||||||||||||||||||||    
T  26669292 gtaaatttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaata 26669361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 62492 - 62617
Alignment:
Q  45 aaatgttaacgagt-tctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||  ||||||||||||| |||| || || | |||||| |||| ||||  ||||||||    
T  62492 aaatgttaacgagtgtctccggggt-actctttaagcactttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagtt 62590  T
Q  144 gactttttaaaagaatagttgctaaat 170  Q
    ||||||||||||||||| || ||||||    
T  62591 gactttttaaaagaataattactaaat 62617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 20238 - 20330
Alignment:
Q  67 gacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||| | | |||| ||| |||||| |||||||| ||||||||||||||||    
T  20238 gacactctttaagcactttaaatgataagttttta-tgaaaagttgtgtatttaatgcatttgaaattgtaatagttaactttttaaaagaata 20330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 1205 - 1076
Alignment:
Q  44 aaaatgttaacgagttctcccgggacactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagtt 143  Q
    ||||||||||||||| |  |||||| | ||||||| || ||||||    |||||||||||||||| || || | |||||| |||||||||||||||||||    
T  1205 aaaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataatagtt 1106  T
Q  144 gactttttaaaagaatagttgctaaattta 173  Q
    || |||| ||||||||| || |||| ||||    
T  1105 gatttttcaaaagaataattactaatttta 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 1723 - 1786
Alignment:
Q  97 ttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||| ||||||||||||||| | |||| |||||||||| ||||||||| |||||||||||||||    
T  1723 tttttatgaaaagttgtgcattcaatgcattggaaattgtaatagttggctttttaaaagaata 1786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 950 - 1030
Alignment:
Q  96 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaatttagga 176  Q
    ||||| |||||||| |||| | | |||  |||| ||||| ||||||||||||||||||||||| | |||||||||||||||    
T  950 ttttttatgaaaagatgtgtattcaatacattgaaaattgtaatagttgactttttaaaagaacaattgctaaatttagga 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 1501 - 1432
Alignment:
Q  91 gtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaata 160  Q
    |||| |||||||||||||||| || | | |||  | || ||||| |||||||||||||||||||||||||    
T  1501 gtaaatttttaatgaaaagttatgtattaaatacagtgaaaattgtaatagttgactttttaaaagaata 1432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 103640 - 103741
Alignment:
Q  69 cactctttaagcactttaaaaggtaagtttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaa 168  Q
    ||||||||||||| || |||   ||| ||||||||||||| ||||  | |||||| |||  ||||| ||||| | ||||||||||||||||| || ||||    
T  103640 cactctttaagcatttaaaataataaatttttaatgaaaaattgtatattgaatgcattaaaaattgtaatattcgactttttaaaagaataattactaa 103739  T
Q  169 at 170  Q
    ||    
T  103740 at 103741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 335866 - 335942
Alignment:
Q  96 tttttaatgaaaagttgtgcaatgaatgaattggaaattataatagttgactttttaaaagaatagttgctaaattt 172  Q
    ||||||||||||||||||| |  ||||  |||| ||||||||||| || |||||| ||| ||||| || ||||||||    
T  335866 tttttaatgaaaagttgtgtatcgaatacattgaaaattataataattaacttttgaaatgaataattactaaattt 335942  T

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