View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12425_high_1 (Length: 397)
Name: NF12425_high_1
Description: NF12425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12425_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 53790847 - 53791073
Alignment:
| Q |
18 |
caatttgttgaaaggaagttcctttatgatgtggtggacttgactttgagcattcaaacgtgtaaccaaacactcacctctaagtgtgaatctcaattgt |
117 |
Q |
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| T |
53790847 |
caattcgttgaaaggaagttcctttatgatgtggtgggcttgactttgagcattcaaacgtgtaaccaaacactcacctctaagtgtgaatctcaattgt |
53790946 |
T |
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| Q |
118 |
ttagggatctggtcagtagttatctcagaatggcgttttggagtactggagggggttactaccattgcttaattgtttgtatacattgctacattgtgaa |
217 |
Q |
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| T |
53790947 |
ttggggatctggtcagtagttatctcagaatggcgttttggagtagtggagggggttactaccattgcttaattgtttgcatacattgctacattgtgaa |
53791046 |
T |
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| Q |
218 |
gagtactgattagcatgattcatatgt |
244 |
Q |
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| T |
53791047 |
gagtactgattagcatgattcatatgt |
53791073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 50950878 - 50950934
Alignment:
| Q |
181 |
attgcttaattgtttgtatacattgctacattgtgaagagtactgattagcatgatt |
237 |
Q |
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| T |
50950878 |
attgcttctttgtttgcatacattgcaactttgtgaatagtactgtttagcatgatt |
50950934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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