View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12425_low_1 (Length: 579)
Name: NF12425_low_1
Description: NF12425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12425_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 10011737 - 10011437
Alignment:
| Q |
22 |
accttcagacgtt--tttcttaccacaattaataatgtaccttggtgtactatatggaaaacatgcaactgatctatttcccacgtatgttcacacacta |
119 |
Q |
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| T |
10011737 |
accttcagacgttgctttcttaccacaattaataat-taccttggtgtactatatggaaaacatgcagctgatctatttcccacgcatgttcacacacta |
10011639 |
T |
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| Q |
120 |
aaccagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactataggaatcacagtgctctcttcccttggttcaacaacacagtatcc |
219 |
Q |
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| T |
10011638 |
aaccagcatctatcataactttttttattctagctcttcttcccatgctaactttaggaatcacagtgctctcttcccttggttcaacagcacagtatcc |
10011539 |
T |
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| Q |
220 |
atccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttcatcaaccttcatcaacaacgaaatttacgacatgttttggatcgat |
319 |
Q |
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| T |
10011538 |
atccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttcat----------caacaacgaaatttacgacatgttttggatcgat |
10011449 |
T |
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| Q |
320 |
tcaatgaacacc |
331 |
Q |
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| T |
10011448 |
tcaatgatcacc |
10011437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 323 - 554
Target Start/End: Complemental strand, 10011409 - 10011179
Alignment:
| Q |
323 |
atgaacacccctctttgttgtccaaatccaagctctgtggtagtgttctannnnnnnnactgatatgaatttgatgtccaactcttctaaatcatttttg |
422 |
Q |
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| T |
10011409 |
atgaacacccctctttgttgtccaaatccaagctctgtggtggtgttctattttttt-actgatatgaatttgatgtccaactcttctaaatcatttatg |
10011311 |
T |
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| Q |
423 |
tctcccttcgaaaaaggaaagnnnnnnnnctcgtctgcttcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtcca |
522 |
Q |
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| T |
10011310 |
tctcccttcgaaaaaggaaagaaaaataactcttctgcttcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtcca |
10011211 |
T |
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| Q |
523 |
attctccaaaacaggagcacctctcttctata |
554 |
Q |
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| T |
10011210 |
attctccaaaacaggagcacctctcttctata |
10011179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 462 - 549
Target Start/End: Complemental strand, 561652 - 561565
Alignment:
| Q |
462 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
549 |
Q |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctctt |
561565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 549
Target Start/End: Original strand, 17688782 - 17688868
Alignment:
| Q |
462 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
549 |
Q |
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| T |
17688782 |
tcagaaacgagaaagaatatagaagaaaaggacaa-ttttaaagaaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
17688868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 549
Target Start/End: Complemental strand, 1678954 - 1678868
Alignment:
| Q |
462 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
549 |
Q |
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| T |
1678954 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaa-gaaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
1678868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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