View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12425_low_3 (Length: 238)
Name: NF12425_low_3
Description: NF12425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12425_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 33079392 - 33079596
Alignment:
| Q |
20 |
aggaggctcaccgtcattgtttcctcgaccagaggcagctaagctcaccaaaagtttggaatcctcctccaaccgtgcaacacttccatgcaatactttg |
119 |
Q |
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| T |
33079392 |
aggaggctccccgtcattgtttcctcgaccagaggcagctaagttcaccaaaagtttggaatcatcctccaaccgtgcaacactttcatgcaatactttg |
33079491 |
T |
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| Q |
120 |
aacttcgtgttcaaaaactcaagcaaggtctcaactttgcgcttttcatccgccaattttctatttttgttctccaaatcacttatagtttccaatttct |
219 |
Q |
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| T |
33079492 |
aacttcgtgttcaaaaactcaagtgaggtctcaactttgcgcttttcatccgccaattttctatttttgttctccaaatcacttatagtttccaatttct |
33079591 |
T |
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| Q |
220 |
cagtc |
224 |
Q |
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||||| |
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| T |
33079592 |
cagtc |
33079596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 41519132 - 41519251
Alignment:
| Q |
33 |
tcattgtttcctcgaccagaggcagctaagctcaccaaaagtttggaatcctcctccaaccgtgcaacacttccatgcaatactttgaacttcgtgttca |
132 |
Q |
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||||||||||| | |||||||||| ||| |||| |||| |||||||| |||||||||| |||||| ||| |||| ||| |||| ||||| |||||| |
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| T |
41519132 |
tcattgtttccaccaccagaggcatctacactcattgaaaggttggaatcatcctccaaccttgcaactctttcatgaaatgctttaaactttttgttca |
41519231 |
T |
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| Q |
133 |
aaaactcaagcaaggtctca |
152 |
Q |
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|| |||| || ||| ||||| |
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| T |
41519232 |
aagactcgagtaagatctca |
41519251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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