View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12426_high_1 (Length: 503)
Name: NF12426_high_1
Description: NF12426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12426_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Complemental strand, 41861430 - 41860959
Alignment:
| Q |
11 |
gaagcagagatcccaaaacaaggtgaagaattctatgagccaaaggtataccagcacacattcttctaccagcaccaaatggtataaactcataatgttg |
110 |
Q |
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| T |
41861430 |
gaagcaaagatcccaaaacaaggtgaagaattctatgagccaaaggtataccagcacacattcttctaccagcaccaaatggtataaactcataatgttg |
41861331 |
T |
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| Q |
111 |
tcctctataatcactcttataactcttattattgatatcacaaaatctctcaggtttgaaaaccaatggttcatcccaaacatcagggtctcttccaatt |
210 |
Q |
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| T |
41861330 |
tcctctataatcactcttat---------tattgatatcacaaaatctctcaggtttgaaaaccaatggttcatcccaaacatcagggtctcttccaatt |
41861240 |
T |
|
| Q |
211 |
gcccatgtgttaacaaatacttgtgtgtcttttggtacgaagtatcccatgaattctgtgtcttgtactgcttttcttgggacaagtagtggaattggag |
310 |
Q |
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| T |
41861239 |
gcccatgtgttgacaaatacttgtgtgtcttttggtacgaagtatcccatgaattctgtgtcttgtactgcttttcttgggacaagtagtggaattggag |
41861140 |
T |
|
| Q |
311 |
gatgtaaccttagtgtttctttgacaacaccttgtaggtatggaagcttgtctatgtcactctcttcaacatctttggtaccaattactgaactaagctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41861139 |
gatgtaaccttagtgtttctttgacaacaccttgtaggtatggaagcttgtctatgtcactctcttcaacatctttggtaccaattactgaactaagctc |
41861040 |
T |
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| Q |
411 |
ggttttgagtttcaacatacaatcacggttgcataacagttctgtcatagcccattcaattgtgctacttgttgtttctga |
491 |
Q |
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| T |
41861039 |
ggttttgagtttcaacatacaatcacggttgcataacagttctgtcatagcccattcaattgtgctacttgttgtttctga |
41860959 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 35048232 - 35048188
Alignment:
| Q |
66 |
acacattcttctaccagcaccaaatggtataaactcataatgttg |
110 |
Q |
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| T |
35048232 |
acacattcttctacccgcaccaaatggaatcaactcaaaatgttg |
35048188 |
T |
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