View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12426_high_2 (Length: 401)
Name: NF12426_high_2
Description: NF12426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12426_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 42393450 - 42393077
Alignment:
| Q |
11 |
cataggaaggggcggacgcatgtaggaatatgcagtttccaaattacactccaattgcgttgaatgaattcatgagcaggttcaacaattagcaattagc |
110 |
Q |
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| T |
42393450 |
cataggaaggggcggacgcatgtaggaatatgcagtttccaaattacactccaattgcgttgaatgaattcacgagcaggttcaacaattagcaattagc |
42393351 |
T |
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| Q |
111 |
ttcatacgtaagctgtatgaagacttgacagaaaattttccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaagcggcattt |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42393350 |
ctcatacgtaagctgtatgaagacttgacagaatattttccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaagaggcattt |
42393251 |
T |
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| Q |
211 |
gaaaaattgcatcagcatcaaaagtattaaaactagcactcctcgtgtcattgttccaagagagaagatcagaagacatcagactgtgtactgtcaaccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393250 |
gaaaaattgcatcagcatcaaaagtattaaaactagcactcctcgtgtcattgttccaagagagaagatcagaagacatcagactgtgtactgtcaaccc |
42393151 |
T |
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| Q |
311 |
gagaaggtgagggtatggcgaatctaaggatcattccaaatgttaattttggaaccatctccagatgttattta |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393150 |
gagaaggtgagggtatggcgaatctaaggatcattccaaatgttaattttggaaccatctccagatgttattta |
42393077 |
T |
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