View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12426_low_3 (Length: 398)
Name: NF12426_low_3
Description: NF12426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12426_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 5830186 - 5830431
Alignment:
| Q |
19 |
aaaattccaatcatcactggtttttgttgcgagaaaaatgaaacttttatgttgcacttagcatatatgtttcacttgctactcaagggtgcaaagtgtt |
118 |
Q |
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| T |
5830186 |
aaaattccaatcatcactggtttttgttgcgataaaaatgaaacttttatgttgcacttagcatatatgtttcacttgttactcaagagtgcaaagtgtt |
5830285 |
T |
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| Q |
119 |
agagccgcagcaaaaatttggcttctaatagtgatatgaaatacaatcctcattaaaatttaaagagaaaataatgtagcctgaataataaattgtatga |
218 |
Q |
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| T |
5830286 |
agagccgcagcaaaaatttggcttctaatagtgatatgaaatacaatcctcattaaaattgaaagagaaaataatgtagcctgaataataaattgtatga |
5830385 |
T |
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| Q |
219 |
agaaatataaatgtctaaagaagaaagattaaacttatgataatat |
264 |
Q |
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| T |
5830386 |
agaaatataaatgtctaaagaagaaagattaaacttatgataatat |
5830431 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 29084721 - 29084762
Alignment:
| Q |
209 |
aattgtatgaagaaatataaatgtctaaagaagaaagattaa |
250 |
Q |
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| T |
29084721 |
aattgtatgaagaaatataaatttctaaagaagaaagattaa |
29084762 |
T |
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