View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12426_low_4 (Length: 391)
Name: NF12426_low_4
Description: NF12426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12426_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 43212095 - 43212460
Alignment:
| Q |
12 |
acctgtgaacttctccgggtttttgttacaggttcatccatatgaaaagagaaacacattgatgcttgctcaagactatgatttgcatatattccatgcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43212095 |
acctgtgaacttctccgggtttttgttacaggttcatccatatgaaaagagaaacacattgatgcttgctcaagactatgatttgcatatattccatgcc |
43212194 |
T |
|
| Q |
112 |
atgttgtttttgacataacctttctgttgatgcagaggctgttcagcgtgctattgctattgcagagactgagggtgatggtcaaatagaagccactcat |
211 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43212195 |
atattgtttttgacataacctttctgttgatgcagaggctgttcagcgtgctattgctattgcagagactgagggtgatagtcaaatagaagccactcat |
43212294 |
T |
|
| Q |
212 |
ttggagagtattcttcctcagttgcttctagatttctaaagcatttgatgatttg-aatacccatctgtaactattactctccctatcatggatctagtg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43212295 |
ttggagagtattcttcctcagttgcttctagatttctaaagcatttgatgatttgaaatacccatctgtaactattactctccctatcatggatctagtg |
43212394 |
T |
|
| Q |
311 |
aaaaattgatcaaaatttttggtgaaaggttgtatcagatacaactaattatcttaatggaaattt |
376 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43212395 |
aaaaattgatcaagatttttggtgaaaggttgtatcagatacagctaattatcttaatggaaattt |
43212460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University