View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12426_low_7 (Length: 242)
Name: NF12426_low_7
Description: NF12426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12426_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 21056951 - 21057181
Alignment:
| Q |
11 |
ctgtgcttctgattcggtgttgactttggtgggttttgtgagtatgttgcttgactttgagttctttaagtgnnnnnnnncaactaaatagcaattattg |
110 |
Q |
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| T |
21056951 |
ctgtgcttctgattcggtgttgactttggtgggttttgtgagtatgttgcttgactttgagttctttaagtgtcttttt-caactaaatagcaattattg |
21057049 |
T |
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| Q |
111 |
tttgcttcttagaagattatcaaatagcaataaaattaagttcaaagacatacactgaaggactctattatgtatgtatcttgatgacatgtatactaac |
210 |
Q |
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| T |
21057050 |
tttgcttcttagaagattatcaaatagcaataaaattaagttcaaagacatacactgaaggactctattatgtatgtatcttgatgacatgtatactaac |
21057149 |
T |
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| Q |
211 |
ttttgcgttttggaatctaactctttatattt |
242 |
Q |
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| T |
21057150 |
ttttgcgttttggaaactaaatatttatattt |
21057181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 26365062 - 26364849
Alignment:
| Q |
11 |
ctgtgcttctgattcggtgttgactttggtgggttttgtgagtatgttgcttgactttgagttctttaagtgnnnnnnnncaactaaatagcaattattg |
110 |
Q |
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| T |
26365062 |
ctgtgcttctgattcggtgttgactttgatgggttttgtgagtatgttgcttgactttgagttctttaagtgtattttt-caactaaatagcaattattg |
26364964 |
T |
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| Q |
111 |
tttgcttcttagaagattatcaaatagcaataaaattaagttcaaagacatacactgaaggactctattatgtatgtatcttgatgacatgtatactaac |
210 |
Q |
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| T |
26364963 |
tttgcttcttagaagattctcaaatagcaataaaatgaagttcaaagacatacactgaaggactctattatgtatgtatcttgatgc-----atattaac |
26364869 |
T |
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| Q |
211 |
ttttgcgttttggaatctaa |
230 |
Q |
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| T |
26364868 |
ttttgcgttttggaaactaa |
26364849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 26363179 - 26363094
Alignment:
| Q |
152 |
tcaaagacatacactgaaggactctattatgtatgtatcttgatgacatgtatactaacttttgcgttttggaatctaactctttatattt |
242 |
Q |
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| T |
26363179 |
tcaaatacatacactgaaggactctattatgtatgtattttg-----atgtatactaacttttgcgttttggaaacaaaatatttatattt |
26363094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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