View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12427_high_4 (Length: 525)
Name: NF12427_high_4
Description: NF12427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12427_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Original strand, 3659371 - 3659853
Alignment:
| Q |
18 |
ccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
117 |
Q |
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|||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659371 |
ccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
3659469 |
T |
|
| Q |
118 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
217 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3659470 |
ttgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaaaattttcacgccttta |
3659569 |
T |
|
| Q |
218 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgt |
317 |
Q |
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| T |
3659570 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgc---------------cactatatctccgt |
3659654 |
T |
|
| Q |
318 |
catcgctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaacaccctgataagagtccacaacatctacaactgcaaactt |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3659655 |
catcgctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaacaccctgagaagagtccacaacatctacaactgcaaactt |
3659754 |
T |
|
| Q |
418 |
tctattctccaaaacctcgccttggtcatcatttgaggaacttccatctgattcacaagttcttgtgctataaacctcacaaacattaccattctctgc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3659755 |
tctattctccaaaacctcgccttggtcatcatttgaggaacttccatccgattcacaagttcttgtgctataaacctcacaaacattaccattctctgc |
3659853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 3653106 - 3653449
Alignment:
| Q |
19 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaaa |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
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| Q |
118 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
|
| Q |
218 |
ctcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctttcactatatctccgt |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3653304 |
ctcttcaaatcagttctgctttccattttaagcggcagtggagcagagaacagaatcttctcttggtgtgcttgaaactactctttcactatatctccgt |
3653403 |
T |
|
| Q |
318 |
catcgctactacgtgttgatcctccactgtcctccaccagcacttc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3653404 |
catcgctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 106 - 363
Target Start/End: Original strand, 3657199 - 3657452
Alignment:
| Q |
106 |
agtccaatcaaattctcctagaatacaatcaaacattacaaatcaaagggtag---acaaagccttacatgaatataatgtaacgacatttcacgtcaaa |
202 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||||||||||| |||| |||| | | |||||||| || |||| |
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| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatga---taattttatgacatttcgcgacaaa |
3657295 |
T |
|
| Q |
203 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
302 |
Q |
| |
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| ||||| || ||||||||||| || |||| ||||||||||| ||||||| ||| |||||||||| |||||| || ||| | ||||||||||||| |
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| T |
3657296 |
ttgttcacaccattactcttcaagtct----tgctctccattttaagcggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctt |
3657391 |
T |
|
| Q |
303 |
tcactatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
363 |
Q |
| |
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||| | |||||| | | | || ||||| ||||||||| ||| |||||||||||||||||| |
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| T |
3657392 |
tcagtcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcacttc |
3657452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 344
Target Start/End: Original strand, 3649181 - 3649322
Alignment:
| Q |
203 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctcttggtgtgcttgaaactgctctt |
302 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| |||||||||||| || | |||| ||||| |||||| || ||| | |||||||| |||| |
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|
| T |
3649181 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
|
| Q |
303 |
tcactatatctccgtcatcgctactacgtgttgatcctccac |
344 |
Q |
| |
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||||| |||||| | | | |||||||| ||||||||||||| |
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| T |
3649281 |
tcactcaatctccataaccactactacgcgttgatcctccac |
3649322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 36164576 - 36164634
Alignment:
| Q |
203 |
attttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagc |
261 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
36164576 |
attttcacacttttactcttcaaatcagttctgctttccatcttaagcggcaatggagc |
36164634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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