View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12427_low_1 (Length: 948)
Name: NF12427_low_1
Description: NF12427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12427_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 772; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 772; E-Value: 0
Query Start/End: Original strand, 21 - 911
Target Start/End: Original strand, 12804919 - 12805808
Alignment:
| Q |
21 |
aatgaagccaattcaaattgaaatgagagggattgtgagattgtgcacgtatgagaatgtacggttaaaagaagacttaaagacaatgaccggagctacc |
120 |
Q |
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| T |
12804919 |
aatgaagccaattcaaattgaaatgagagggattgtgagattgtgcacgtatgagaatgtacggttaaaagaagacttaaagacaatgaccggagctacc |
12805018 |
T |
|
| Q |
121 |
tttacaaacaatttgcatctttttcccgatatatcatatggtaagaacttcgcaagtgtgcattacattgatcaattttggaatgaattgaatgttgggt |
220 |
Q |
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| T |
12805019 |
tttacaaacaatttgcatctttttcccgatatatcatatcgtaagaacttcgcaagtgtgcattacattgatcaattttggaatgagttgaatgttgggt |
12805118 |
T |
|
| Q |
221 |
aagttcnnnnnnntgtgtgagtgacgacaaaacatgctaaattgactcatgttgatttgtagagatagctgctaatacttaaagttgtataagattttac |
320 |
Q |
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| T |
12805119 |
aagttcaaaaaaatgtgtgagtgacgacaaaacatactaaattgacttatgttgatttgtagagataactgctaatacttaaagttgtataagattttac |
12805218 |
T |
|
| Q |
321 |
taaagctatcaaaacaaaccatcttttagtacaatatggttcaccgacgaaccaaaccgacatttttgggcatgtgaagtatgacgctgatgcgggcagg |
420 |
Q |
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| T |
12805219 |
taaagctgtcaaaacaaaccatcttttagtacaatatggttcacggacgaaccaaaccgacatttttgggcatgtgaagtatgaggctgatgcgggcagg |
12805318 |
T |
|
| Q |
421 |
gagtgatctttgatgcatgaagcatattcaataagtggctttggacatgcttataggtaagtgggcacatgaattaaccaaatttacattgaaaatagag |
520 |
Q |
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| T |
12805319 |
gagtgatctttgatgcatgaagcatattcaataagtggctttggacatgcttataggcaagtggacacgtgaattaaccaaatttacattgaaaatagag |
12805418 |
T |
|
| Q |
521 |
acaatatgaggttgtgcaggtctttgaccgtatagttgaagaaaaacttataagaattgatttgcactacctatacaaataagaggcatttttctttgga |
620 |
Q |
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| T |
12805419 |
acaatatgaggttgtgcaggtctttgaccgtatagttgaagaaaaacttataagaattgatttgcactacctatacaaataagaggcatttttctttgga |
12805518 |
T |
|
| Q |
621 |
aaataatgtataaagcgaaaaatggaatcacgaaagtatcacgactctttaaaacacttctacatttattgtgctgacataatgcttggttagtgggagc |
720 |
Q |
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| T |
12805519 |
aaataatgtataaagcgaaaaatggaatcacgaaagtatcacgactctttaaaacacttctgcatttattgtgctgacataatgtttggttagtgggagc |
12805618 |
T |
|
| Q |
721 |
annnnnnnnnnngttatcaaagcaatttccattcgcgaagttgtcgctagataatttgtcgggacatatagcatccccctttttctttttgcaagctcat |
820 |
Q |
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| T |
12805619 |
a-ttttttttttgttatcaaagcaatttccattcgcgaagttgtcgctagataatttgtcgggacatatagcatccccctttttctttttggaagctcat |
12805717 |
T |
|
| Q |
821 |
accataaaaactacatagttaagcgtgcttgaatttcctattcgcgtgactgatgaacgaaattggtaaatgcaccaaatcgtaacaagta |
911 |
Q |
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| T |
12805718 |
accataaaaactacatagttaagcgtgcttgaatttcctattcgtgtgactgatgaacgaaattggtaaatgcaccaaatcgtaacaagta |
12805808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 604
Target Start/End: Original strand, 17628995 - 17629070
Alignment:
| Q |
529 |
aggttgtgcaggtctttgaccgtatagttgaagaaaaacttataagaattgatttgcactacctatacaaataaga |
604 |
Q |
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| T |
17628995 |
aggtcgtgcaggtatgtgaatgtatggttgaataaaaacttataagaattgtttggtactacctatactaataaga |
17629070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 3656114 - 3656179
Alignment:
| Q |
387 |
tgggcatgtgaagtatgacgctgatgcgggcagggagtgatctttgatgcatgaagcatattcaat |
452 |
Q |
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| T |
3656114 |
tgggcatgtggagcttgacgctgatgagggcatggagtgattgttgatgcatgaagcatgttcaat |
3656179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 869 - 934
Target Start/End: Complemental strand, 7494557 - 7494484
Alignment:
| Q |
869 |
actgatgaacgaaattggtaaatgcaccaaatcgtaacaag--------tagtaagtttatcattctccacagg |
934 |
Q |
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| T |
7494557 |
actgatggacgaaattggcaagtgcaccaaatcgtaacaagtaataaattagtaagtttatcattctccacagg |
7494484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 870 - 911
Target Start/End: Complemental strand, 26853673 - 26853632
Alignment:
| Q |
870 |
ctgatgaacgaaattggtaaatgcaccaaatcgtaacaagta |
911 |
Q |
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| T |
26853673 |
ctgatggatgaaattggaaaatgcaccaaatcgtaacaagta |
26853632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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