View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12427_low_2 (Length: 810)
Name: NF12427_low_2
Description: NF12427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12427_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 4196223 - 4196626
Alignment:
| Q |
20 |
tcttcttggatggattggtttcatggtggtttgcagtttcagattgagcatcatttgtttccgcgtcttccacgatgtaatttgaggaagatttcacctt |
119 |
Q |
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| T |
4196223 |
tcttcttggatggattggtttcatggtggtttgcagtttcagattgagcatcatttgtttccgcgtcttccacgatgtaatttgaggaagatttcacctt |
4196322 |
T |
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| Q |
120 |
tggttaaggatctgtgcaagaaacataatcttccttacaattgtgtgtctttctggaaggctaatgtgcttactattcagactttgaggaatgcggcttt |
219 |
Q |
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| T |
4196323 |
tggttaaggatctgtgcaagaaacataatcttccttacaattgtgtgtctttctggaaggctaatgtgcttactattcagactttgaggaatgcggcttt |
4196422 |
T |
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| Q |
220 |
gcaggcgagggatcttactaaaccagttcctagaaatttagtttgggaagctgttaatactcatggatgaatgttccaattgagtgaagcttcgtaagaa |
319 |
Q |
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| T |
4196423 |
gcaggcgagggatcttactaaaccagttcctagaaatttagtttgggaagctgttaatactcatggatgaatgttccaattgagtgaagcttcgtaagaa |
4196522 |
T |
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| Q |
320 |
taataactgttttgcaaattgcttagatgcttagattcgattgctaattgtcttagctgtttgcatgctgttgatactgataagaaaagaactattgata |
419 |
Q |
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| T |
4196523 |
taataactgttttgcaaattgcttagatgcttagattcgattgctaattgtcttagctgtttgcatgctgttgatactgataagaaaagaactattgata |
4196622 |
T |
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| Q |
420 |
cttg |
423 |
Q |
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|||| |
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| T |
4196623 |
cttg |
4196626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 495 - 790
Target Start/End: Original strand, 4196698 - 4196997
Alignment:
| Q |
495 |
agttccttatgtggccatggatatttctacaatataacaatttgtgttatgcctgaaaatccattgtcttttggagcaaagaataagtaatgtatgttaa |
594 |
Q |
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| T |
4196698 |
agttccttatgtggccatggatatttctacaacataacaatttgtgttatgcctgaaaattcattgtcttttggagcaaagaataagtactgtatgttaa |
4196797 |
T |
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| Q |
595 |
attggaatcaaattttagtaattggtataagcaaatggctgctgattgttaagtttcttagatgaatgaatgcttagatatcctgtttctagacagaaaa |
694 |
Q |
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| T |
4196798 |
attggaatcaaattttagtaattggtataagcaaatggctgctgattgttaagtttcttagatgaatgaatgcttagatatcctgtttctagacagaaaa |
4196897 |
T |
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| Q |
695 |
cagacaacgcttgtataattggaacttatatgatgtgggaaactaaga----nnnnnnnnncttctattgaaatctactaaagaaatttcacatcttttc |
790 |
Q |
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| T |
4196898 |
cagacaacgcttgtataattggaacttatatgatgtgggaaactaagattttttttttttttttctattgaaatctactaaagaaatttcacatcttttc |
4196997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 4187218 - 4187294
Alignment:
| Q |
194 |
attcagactttgaggaatgcggctttgcaggcgagggatcttactaaaccagttcctagaaatttagtttgggaagc |
270 |
Q |
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| T |
4187218 |
attcagacgttgaggaatgctgctttgcaagctcgggatcttactaaaccgattccgagaaatttagtttgggaagc |
4187294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 548
Target Start/End: Original strand, 4187866 - 4187917
Alignment:
| Q |
497 |
ttccttatgtggccatggatatttctacaatataacaatttgtgttatgcct |
548 |
Q |
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| T |
4187866 |
ttccttatgcggcaatggatatttgtactacataacaatttgtgttatgcct |
4187917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 24416894 - 24416839
Alignment:
| Q |
26 |
tggatggattggtttcatggtggtttgcagtttcagattgagcatcatttgtttcc |
81 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |
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| T |
24416894 |
tggatggattggttctttggtggtttgcagtttcagcttgaacatcatttgtttcc |
24416839 |
T |
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