View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12427_low_3 (Length: 734)
Name: NF12427_low_3
Description: NF12427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12427_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 164 - 721
Target Start/End: Complemental strand, 46009149 - 46008592
Alignment:
| Q |
164 |
gtgaagattgaaataattggtacctgtttttgagctggaagagaagggtgtgttttgagatggagaagatttgggacattgttgttagaaattggatgag |
263 |
Q |
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| T |
46009149 |
gtgaagattgaaataattggtacctgtttttgagctggaagagaaaggtgtgttttgagatggagaagatttgggacattgttgttagaaattggatgag |
46009050 |
T |
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| Q |
264 |
ttctcttgctattggttttgatatcactagctctagtggttatgaatgattcttcttgcttgtttctgattgatgatgatttctgaggaggcttgtttct |
363 |
Q |
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| T |
46009049 |
ttctcttgctattggttttgatatcactagctctagtggttatgaatgattcttcttgcttgtttctgattgatgatgatttctgaggaggcttgtttct |
46008950 |
T |
|
| Q |
364 |
gtttatccgtggactcaaattcccatgtgctgttttcttgcattttgggaaagattttttgtcctccttctctgacattgcttgtgtttgtggctttgtt |
463 |
Q |
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| T |
46008949 |
gtttatccgtggactcaaattcccatgtgctgttttcttgcattttgggaaagattttttgtcctccttctctgacattgcttgtgtttgtggctttgtt |
46008850 |
T |
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| Q |
464 |
gaaactcttgaaacttgtgcttcaatgttgactgcaggtggtggtgatgattgttttagtacttgatgtgtattttggtctcttggagtagttgttggtg |
563 |
Q |
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| T |
46008849 |
gaaactcttgaaacttgtgcttcaatgttgactgcaggtggtggtgatgattgttttagtacttgatgtgtattttggtctcttggagtagttgttggtg |
46008750 |
T |
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| Q |
564 |
aatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttgagggtacttttccttggtttgattcatctaatggtttaag |
663 |
Q |
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| T |
46008749 |
aatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttgagggtacttttccttgatttgattcatctaatggtttaag |
46008650 |
T |
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| Q |
664 |
agctttcttgaatttgatttgagcaacaaaatcttctttcgctttttcttgttctctg |
721 |
Q |
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| T |
46008649 |
agctttcttgaatttgatttgagcaacaaaatcttctttcactttttcttgttctctg |
46008592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 46009319 - 46009211
Alignment:
| Q |
18 |
acttgtggcacgaagtactaaataactgtgacatgttttttgcttcttggacatcatgattgacctgtgtttgaannnnnnnnacaagcaactcttaatt |
117 |
Q |
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| T |
46009319 |
acttgtggcacgaagtactaaataactgtgacatgttttttgcttcttggacatcatcattgacctgtgtttgaa-tttttttacaagcaactcttaatt |
46009221 |
T |
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| Q |
118 |
taaaatattc |
127 |
Q |
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| T |
46009220 |
taaaatattc |
46009211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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