View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12427_low_4 (Length: 560)
Name: NF12427_low_4
Description: NF12427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12427_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 270 - 545
Target Start/End: Complemental strand, 20724125 - 20723850
Alignment:
| Q |
270 |
acatcagttttaatggtgctccaataagtatgaaagaaaaaggcaccaaactcaatggcccaagagcactctccttgttgaggacataaacatcattttt |
369 |
Q |
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| T |
20724125 |
acatcagttttaatggtgctccaataagtatgaaagaaaaaggcaccaaacccaatggcccaggagcactctccttgttgaggacataaacatcattttt |
20724026 |
T |
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| Q |
370 |
aatttcatttgaagatgagagtaaagtcagcatatggaaattttttgtatttctgtcccctcgagcatgccaagtaactcgagctttctcttgccataaa |
469 |
Q |
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| T |
20724025 |
aatttcgtttgaagatgagagtaaagtcagcatatggaaattttttgtatttctgtcccctcgagcatgccaagtaactcgagctttatcttgctataaa |
20723926 |
T |
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| Q |
470 |
acttcttcaatggttaagagcttcatcaagcttaatctgagccaattttccttgatctagcaaatcatcaaaatga |
545 |
Q |
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| T |
20723925 |
acttcttcaatggttaagagcttcatcaagcttaatctgagccaattttccttgatctagcaaatcatcaaaatga |
20723850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 20724259 - 20724120
Alignment:
| Q |
10 |
gcagagagagttgggctttgggatccaaaccctaatgatgaaaacctataaacatactatcatagagcccatgatttttgcagtaaagaaatcaacatct |
109 |
Q |
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| T |
20724259 |
gcagagagagttggactttgggatccaaaccctagtgatgaaaacctataaacatactatcatagagcccatgatttttgcagtaaagaaatcaacatct |
20724160 |
T |
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| Q |
110 |
tgaaggaactatagctttatgcgcaccatgtccaagatca |
149 |
Q |
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| T |
20724159 |
tgaaggaactctagctttatgcgcaccatgtccaacatca |
20724120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 42902412 - 42902478
Alignment:
| Q |
135 |
ccatgtccaagatcactttcctcgatttatttgagtttgaggaaaatcatttcttatattatctgca |
201 |
Q |
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| T |
42902412 |
ccatgtccaagatcacttttgtcgatttatttgactttgcggacaatcatttcttacattatctgca |
42902478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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