View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12428_high_2 (Length: 415)
Name: NF12428_high_2
Description: NF12428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12428_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 144 - 394
Target Start/End: Original strand, 43082904 - 43083154
Alignment:
| Q |
144 |
taggcaatttctacgaacatgcgtgctaaagtagannnnnnnnnnnnggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
243 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082904 |
taggcaatttctacgaacatacatgctaaagtagattttttatttttggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
43083003 |
T |
|
| Q |
244 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083004 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
43083103 |
T |
|
| Q |
344 |
ccatgaaacataccaacattttgtactatgactatcgaagaagccacttgc |
394 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
43083104 |
ccatgaaacataccaacagttcgtactatgactatccaagaagccacttgc |
43083154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 43082807 - 43082901
Alignment:
| Q |
24 |
atagttccaatttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082807 |
atagttccattttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
43082901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University