View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12428_low_1 (Length: 485)

Name: NF12428_low_1
Description: NF12428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12428_low_1
NF12428_low_1
[»] chr8 (4 HSPs)
chr8 (8-468)||(27544224-27544684)
chr8 (16-407)||(27504779-27505170)
chr8 (8-462)||(27498690-27499144)
chr8 (76-422)||(27496473-27496819)
[»] chr3 (3 HSPs)
chr3 (8-407)||(11317196-11317595)
chr3 (55-318)||(15461135-15461398)
chr3 (76-417)||(11438767-11439108)
[»] scaffold0071 (1 HSPs)
scaffold0071 (55-318)||(794-1057)


Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 27544224 - 27544684
Alignment:
Q  8 gagcacagagtagaggaccacttccattacaagaagctttcgagagtttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggata 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27544224 gagcacaaagtagaggaccacttccattacaagaagctttcgagagtttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggata 27544323  T
Q  108 ttggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaatttt 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27544324 ttggaaggaaagcttggaaaggccggagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaatttt 27544423  T
Q  208 ttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27544424 ttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaata 27544523  T
Q  308 agataggaaaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgcaaaaatgttctcacaactgaaatgattgagca 407  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27544524 agacaggaaaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgcaaaaatgttctcacaactgaaatgattgagca 27544623  T
Q  408 attgaacactatcactgaaagtaaattggctacacattggttgagattttagattgagtgt 468  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27544624 gttgaacactatcactgaaagtaaattggctacacatgggttgagattttagattgagtgt 27544684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 27504779 - 27505170
Alignment:
Q  16 agtagaggaccacttccattacaagaagctttcgagagtttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggatattggaagg 115  Q
    ||||||||| ||||||||||| |||| ||||| |||||||||||||||||  | | ||||| ||||||||||||||| |||||||| ||||| |||||||    
T  27504779 agtagaggaacacttccattagaagaggcttttgagagtttttgtagaggaacaacttcttatggaccgttttgggatcatgtattaggatactggaagg 27504878  T
Q  116 aaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaattttttgggttg 215  Q
    ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||| |||||||| ||    
T  27504879 aaagcttggaaagaccggagaaggttatgtttttgaaatatgaagaaatgaaaatgaaacctaattttgttttgaaagagattgctaagtttttggggtg 27504978  T
Q  216 tccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaataagatagga 315  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||| || | |||||||||||||| || |||||||||||| |||||||||  ||     
T  27504979 tccattctccgaagaagaagaatccaatggtgtggttgatgatatattacatttgtgtagttttgagaagcttagcaacttggagatcaataagaacggg 27505078  T
Q  316 aaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgcaaaaatgttctcacaactgaaatgattgagca 407  Q
    ||| |||| |  || || ||||||||  |||||||||| || |||  |||||||||||| |||||| ||||||||||| ||||| |||||||    
T  27505079 aaaatttcgtcggaaattgaaaacaagaactttttccgtcttggcaaagttggagattggaaaaatcttctcacaactaaaatggttgagca 27505170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 462
Target Start/End: Complemental strand, 27499144 - 27498690
Alignment:
Q  8 gagcacagagtagaggaccacttccattacaagaagctttcgagagtttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggata 107  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| | |||||||| |||||| ||||||||||||||||| |||||    
T  27499144 gagcacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattaggata 27499045  T
Q  108 ttggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaatttt 207  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||||| |||||||| | |||    
T  27499044 ttggaaggaaaacttggaaaggccagagaaggtgatgtttataaaatttgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgagttt 27498945  T
Q  208 ttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaata 307  Q
     |||||||||||||||  || |||||||||||||| || ||| | ||||||||||||||| | ||||||||||||||  | ||||||||||||||||| |    
T  27498944 ctgggttgtccattctttaatgaagaagaatccaagggcatgatcgatgatatattaaatttgtgtagttttgagaacttaagcaacttggaggtcaaca 27498845  T
Q  308 agataggaaaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgcaaaaatgttctcacaactgaaatgattgagca 407  Q
    |||  | || | |  |    | | | ||||| |||   ||||| || |  |||| |||||||||||| |||||  |||||||| ||||||||||| ||||    
T  27498844 agaccgtaagagtagcaacaggtgttgaaaataaagctttttttcgtcgtggccaagttggagattggaaaaaccttctcacagctgaaatgattaagca 27498745  T
Q  408 attgaacactatcactgaaagtaaattggctacacattggttgagattttagatt 462  Q
    ||| ||||||||||| |||| |||||||| || |||| ||||||| |||||||||    
T  27498744 attaaacactatcaccgaaaataaattgggtaaacatgggttgagtttttagatt 27498690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 76 - 422
Target Start/End: Complemental strand, 27496819 - 27496473
Alignment:
Q  76 tttggaccgttttgggagcatgtattgggatattggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatc 175  Q
    ||||||| |||||||||||||||||| |||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||| |    
T  27496819 tttggactgttttgggagcatgtattaggatattgaacggaaagtttggaaatgccagagaaggtgatgtttttgaaatatgaagaagcgaaaatgaagc 27496720  T
Q  176 ctagtttttatttgaaagagattgctaattttttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtag 275  Q
    ||||||||||||||||| |||||||| | ||||||||||||  ||| || |  |||||||||||||| || |||||||||||| |||||||| | |||||    
T  27496719 ctagtttttatttgaaaaagattgctgagtttttgggttgtggattttctattgaagaagaatccaacggcatggttgatgatttattaaatttgtgtag 27496620  T
Q  276 ttttgagaaactgagcaacttggaggtcaataagataggaaaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgc 375  Q
    ||||||||| ||| |||||||||| ||| |||||| | ||| | | || | || |   ||||| |||   |||||||  |  || | ||||||||||||     
T  27496619 ttttgagaatctgggcaacttggaagtcgataagacatgaagaatatcatctggtgatgaaaataaagcttttttccatcgtggacaagttggagattgg 27496520  T
Q  376 aaaaatgttctcacaactgaaatgattgagcaattgaacactatcac 422  Q
    |||||| |||||||||| |||||||||||||  || |||||||||||    
T  27496519 aaaaatcttctcacaacagaaatgattgagctgttaaacactatcac 27496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 11317595 - 11317196
Alignment:
Q  8 gagcacagagtagaggaccacttccattacaagaagctttcgagagtttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggata 107  Q
    ||||||| ||||||||| |||||||| ||||||| ||||| |||| |||||||||||| | ||||||||||||||| ||||||||||||||||||| |||    
T  11317595 gagcacaaagtagaggaacacttccactacaagaggcttttgagaatttttgtagaggagtgagttcttttggacccttttgggagcatgtattggtata 11317496  T
Q  108 ttggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaatttt 207  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| | |||    
T  11317495 ttggaagaaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaacctaatttttatttgaaagagcttgctgagttt 11317396  T
Q  208 ttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaata 307  Q
    ||||  ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||  ||||||| |||||||||||||    
T  11317395 ttggagtgtccattctccaaagaagaagaattcaaaggtgtggttgatgatatattaaatttgtgtagttttgagaagttgagcaatttggaggtcaata 11317296  T
Q  308 agataggaaaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgcaaaaatgttctcacaactgaaatgattgagca 407  Q
    |||| || |||  || | || |||||||||| |||   |||||||| || ||     |||||||||| ||||||  |||||||||||||||| |||||||    
T  11317295 agatcgggaaaggttttcttaatatggaaaataaagcttttttccgtcttggtaatattggagattggaaaaatcatctcacaactgaaatggttgagca 11317196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 55 - 318
Target Start/End: Original strand, 15461135 - 15461398
Alignment:
Q  55 ttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggatattggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaat 154  Q
    |||| |||||| | |||||  |||||||| |||||||| ||| |||| ||||| ||||| |||||||||||||||| |||||||||||||||||||| ||    
T  15461135 ttttctagaggtgtgagtttgtttggacccttttgggaacatttattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgtttttgagat 15461234  T
Q  155 atgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaattttttgggttgtccattctccaaagaagaagaatccaaaggtatggttga 254  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||| |||||  |||||||    
T  15461235 atgaagaaatgaaaatgaagccttgtttttatttgaaagaggttgctgagtttttggggtgtccattctccaaagaagaagaatctaaaggagtggttga 15461334  T
Q  255 tgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaataagataggaaaa 318  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||| |||||| | ||||||    
T  15461335 tgatatattaaatttgtgtagttttgagaagctgagcaacttggaggtaaataagtttggaaaa 15461398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 76 - 417
Target Start/End: Complemental strand, 11439108 - 11438767
Alignment:
Q  76 tttggaccgttttgggagcatgtattgggatattggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatc 175  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||||||  || | ||||| |||||||||| || |||||||||||||||||| |    
T  11439108 tttggacccttttgggagcatgtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgtttttgagatttgaagaaatgaaaatgaagc 11439009  T
Q  176 ctagtttttatttgaaagagattgctaattttttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtag 275  Q
    ||  |||| |||||||| || ||||| | |||||||  ||||| ||| | ||||| |||||||| |||||  |||||||||||||||||||| | |||||    
T  11439008 ctgattttcatttgaaaaagcttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgatatattaaatttgtgtag 11438909  T
Q  276 ttttgagaaactgagcaacttggaggtcaataagataggaaaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgc 375  Q
    ||||||||| || |||||||||||||| |||||||  || ||| | || |||| | | ||||| |||   ||||| || |  |||| |||||||||| |     
T  11438908 ttttgagaagcttagcaacttggaggttaataagactgggaaagtgtcatttggtgttgaaaataaagctttttttcgtcgtggccaagttggagatgga 11438809  T
Q  376 aaaaatgttctcacaactgaaatgattgagcaattgaacact 417  Q
     ||||  |||| ||||||||||||||||||||||| ||||||    
T  11438808 gaaaagcttctaacaactgaaatgattgagcaattaaacact 11438767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 55 - 318
Target Start/End: Complemental strand, 1057 - 794
Alignment:
Q  55 ttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggatattggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaat 154  Q
    |||| |||||| | |||||  |||||||| |||||||| ||| |||| ||||| ||||| |||||||||||||||| |||||||||||||||||||| ||    
T  1057 ttttctagaggtgtgagtttgtttggacccttttgggaacatttattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgtttttgagat 958  T
Q  155 atgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaattttttgggttgtccattctccaaagaagaagaatccaaaggtatggttga 254  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||| |||||  |||||||    
T  957 atgaagaaatgaaaatgaagccttgtttttatttgaaagaggttgctgagtttttggggtgtccattctccaaagaagaagaatctaaaggagtggttga 858  T
Q  255 tgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaataagataggaaaa 318  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||| |||||| | ||||||    
T  857 tgatatattaaatttgtgtagttttgagaagctgagcaacttggaggtaaataagtttggaaaa 794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University