View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12429_high_1 (Length: 595)
Name: NF12429_high_1
Description: NF12429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12429_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 123 - 471
Target Start/End: Complemental strand, 11358388 - 11358060
Alignment:
| Q |
123 |
tcatgattcaagtagaataactgatcacatgattttgaaaaatcgtagtccctaaccgcaattgggaggagcgcaatatacacaatcattaggtctgtga |
222 |
Q |
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| T |
11358388 |
tcatgattcaagtagaataactaatcacatgattttgaaaaatcgtagtccctaaccgcaat---------------ataaataatcattaggtctgtga |
11358304 |
T |
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| Q |
223 |
aacgatatcgcaacatcaatttggacggaatcagccacatttttccgcaatataaaggctcgcagtataaccgcaaccacgatcgcaactaggtgcattt |
322 |
Q |
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| T |
11358303 |
aacgatatcgcaacatcaatttggaccgaatcagccacatttttccgcaatataaaggctcgcagcataaccgcaacca----cgcaactaggtgcattt |
11358208 |
T |
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| Q |
323 |
caaattgatagtttattgaaggaaaaaagaacaaattactctaaaacatggcatgttacatgtatataacaacaacaaaaaatcagaaactattctgatg |
422 |
Q |
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| T |
11358207 |
caaattgatagtttattgaaggaaaaaagaacaaattactctaaaacatggcatgttacatgtatataa-aacaacaaaaaatcagaaactattctgatg |
11358109 |
T |
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| Q |
423 |
gtgtagctcagtggattaacnnnnnnnccatgtctaggtttgatccatc |
471 |
Q |
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| T |
11358108 |
gtgtagctcagtggattaacaaaaaaaccatgtctaggtttgatccatc |
11358060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11358562 - 11358489
Alignment:
| Q |
1 |
gatatttcacttttgtaggacctgttatgtgagaccttgtgaattattatcaaactgcggctaccatcctaaat |
74 |
Q |
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| T |
11358562 |
gatatttcacttttgtaggacctgttatgtgagaccttgtgaattattatcaaactgcggctaccatcctaaat |
11358489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 11358463 - 11358421
Alignment:
| Q |
75 |
atacctatttcattcatggcagggtcataaaaagagaaggaaa |
117 |
Q |
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| T |
11358463 |
atacctatttcattcatggcagggtcataaaaagagaaggaaa |
11358421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 539 - 584
Target Start/End: Complemental strand, 11357992 - 11357947
Alignment:
| Q |
539 |
ctatacccaaatggccacgcttagctgcaacatgaaatgcattcat |
584 |
Q |
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| T |
11357992 |
ctatacccaaatggccacgcttagctgcaacgtgaaatgcattcat |
11357947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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