View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12429_high_3 (Length: 340)
Name: NF12429_high_3
Description: NF12429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12429_high_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 96 - 340
Target Start/End: Original strand, 1445302 - 1445546
Alignment:
| Q |
96 |
ctattgaagtgtatgtcaattgtgaagaatttggaggtttgttacaagcagttaatcatcagttcattaagtgcgttagatgtagaatcggttaatcatg |
195 |
Q |
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| T |
1445302 |
ctattgaagtgtatgtcaattgtgaagaatttggaggtttgttacaagcagttaatcatcagttcattaagtgcgttagatgtagaatcggttaatcatg |
1445401 |
T |
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| Q |
196 |
agttagttaacgattcagttgacagaactctggttataaataattgatcttttgcaattccaagctgagttgaatgaattttcacctgtgttaatttctt |
295 |
Q |
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| T |
1445402 |
agttagttaacgatccagttgacagaactctggttataaataattgatcttttgcaattccaagctgagttgaatgaattttcacctgtgttaatttctt |
1445501 |
T |
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| Q |
296 |
gtgtagttaatgttctgttctatattctctgaccattttcttgtg |
340 |
Q |
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| T |
1445502 |
gtgtagttaatgttctgttctatattctctgaccattttcttgtg |
1445546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 1445216 - 1445249
Alignment:
| Q |
10 |
attatactgaatcaatattttcaaaacttcactg |
43 |
Q |
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| T |
1445216 |
attatactgaatcaatattttcaaaacttcactg |
1445249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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