View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12429_high_6 (Length: 315)
Name: NF12429_high_6
Description: NF12429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12429_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 40857111 - 40857424
Alignment:
| Q |
1 |
cgaagaccatccaaaacacagtcaaaataagagtccatactcttatcgcattctctctcggtatatatgatcttgtagcacccaatattccatcttggaa |
100 |
Q |
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| T |
40857111 |
cgaagaccatccaaaacacagtcaaaatgagagtccatacacttatcgcattctctctcggtatatatgatcttgtagcacccaatattccatcttggaa |
40857210 |
T |
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| Q |
101 |
gccatagaagtgcatgaggaaacctgttataccgccgagtacaaaccaaatcacaactctaataaatagatcgaagccatccttcattgaaggtcatcga |
200 |
Q |
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| T |
40857211 |
gccatagaagtgtacgaggaaacctgttataccgccgagtacaaaccaaatcccaactctaataaacagatcgaagccatcctgcattgaaggtcctcaa |
40857310 |
T |
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| Q |
201 |
aaaaaggacctctaccaatcacaatatattcaaccaccctcctaatgatnnnnnnnntaaccaccggaaatttcagctagctaaatttatacgatattta |
300 |
Q |
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| T |
40857311 |
agaaaggacctctaccaatcacaatatattcaaccaccctcctaatgataaaaaaaa-aaccaccggaaatttcagctagctaaatttatatgatattta |
40857409 |
T |
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| Q |
301 |
atattgataacgtaa |
315 |
Q |
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||||||||||||||| |
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| T |
40857410 |
atattgataacgtaa |
40857424 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 26008650 - 26008570
Alignment:
| Q |
2 |
gaagaccatccaaaacacagtcaaaataagagtccatactcttatcgcattctctctcggtatatatgatcttgtagcaccca |
84 |
Q |
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|||||||||| ||| ||| | |||||| ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
26008650 |
gaagaccatctaaagcactgccaaaatcagagtccatacacttatcgcattgtctct--taatatatgttcttgtagcaccca |
26008570 |
T |
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