View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12429_high_7 (Length: 308)
Name: NF12429_high_7
Description: NF12429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12429_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 11358224 - 11358060
Alignment:
| Q |
18 |
cgcaactaggtgcatttcaaattgatagtttattgaaggaaaaaagaacaaattactctaaaacatggcatgttacatgtatataacaacaacaaaaaat |
117 |
Q |
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| T |
11358224 |
cgcaactaggtgcatttcaaattgatagtttattgaaggaaaaaagaacaaattactctaaaacatggcatgttacatgtatataa-aacaacaaaaaat |
11358126 |
T |
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| Q |
118 |
cagaaactattctgatggtgtagctcagtggattaacnnnnnnnccatgtctaggtttgatccatc |
183 |
Q |
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| T |
11358125 |
cagaaactattctgatggtgtagctcagtggattaacaaaaaaaccatgtctaggtttgatccatc |
11358060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 11357992 - 11357947
Alignment:
| Q |
251 |
ctatacccaaatggccacgcttagctgcaacatgaaatgcattcat |
296 |
Q |
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| T |
11357992 |
ctatacccaaatggccacgcttagctgcaacgtgaaatgcattcat |
11357947 |
T |
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