View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_105 (Length: 252)
Name: NF1242_high_105
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_105 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 2065098 - 2064860
Alignment:
| Q |
11 |
cacagatatactggtccaacacaacttgagtgtgagcctcagttccaagaacacaacatgccttaacttgattccaagaaataatgtacattcacttaga |
110 |
Q |
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| T |
2065098 |
cacagatattctggtccaacacaacttg--tgtgagcttcagttccaagaacacaacatgccttaacttgattccaagaaataatgtacattcacttaga |
2065001 |
T |
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| Q |
111 |
tttattcaatagtcaaatttaagtgatgaactaataacgcaaatcgaaagtctgatggacacaccggcaccttactctttcccgttaattgtcagggtgg |
210 |
Q |
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| T |
2065000 |
tttattcaatagtcaaatttaagtgatgaactaataacgcaaatcgaaagtctgatggacacaccggcaccttactctttcccgttaattgtcagggtgg |
2064901 |
T |
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| Q |
211 |
attctttgttgatcagtttgagaatctattaaacgtcagtgt |
252 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2064900 |
attc-ttgttgatcagtttgagaatctattaaacgtcagtgt |
2064860 |
T |
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