View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_high_117 (Length: 232)

Name: NF1242_high_117
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_high_117
NF1242_high_117
[»] scaffold0029 (4 HSPs)
scaffold0029 (1-62)||(25978-26039)
scaffold0029 (1-56)||(25996-26051)
scaffold0029 (180-222)||(26187-26229)
scaffold0029 (16-59)||(25975-26018)
[»] chr5 (25 HSPs)
chr5 (1-62)||(11947691-11947752)
chr5 (3-62)||(37003912-37003971)
chr5 (1-62)||(17953916-17953977)
chr5 (1-62)||(36379258-36379319)
chr5 (1-59)||(37003933-37003991)
chr5 (16-62)||(31517121-31517167)
chr5 (179-222)||(5443323-5443366)
chr5 (179-222)||(11947516-11947559)
chr5 (1-56)||(31517124-31517179)
chr5 (179-222)||(31517314-31517357)
chr5 (179-222)||(36379068-36379111)
chr5 (179-222)||(37003722-37003765)
chr5 (180-222)||(17954110-17954152)
chr5 (1-50)||(37003906-37003955)
chr5 (1-56)||(11947679-11947734)
chr5 (16-59)||(11947712-11947755)
chr5 (179-222)||(15787825-15787868)
chr5 (1-56)||(17953934-17953989)
chr5 (3-50)||(36379252-36379299)
chr5 (16-59)||(36379279-36379322)
chr5 (16-59)||(37003951-37003994)
chr5 (16-62)||(5443510-5443556)
chr5 (7-56)||(5443498-5443547)
chr5 (16-56)||(15788033-15788073)
chr5 (34-62)||(15788045-15788073)
[»] chr3 (7 HSPs)
chr3 (1-62)||(5954239-5954300)
chr3 (179-222)||(46377310-46377353)
chr3 (180-222)||(5954049-5954091)
chr3 (16-62)||(46377087-46377133)
chr3 (1-56)||(5954227-5954282)
chr3 (16-59)||(5954260-5954303)
chr3 (1-41)||(46377090-46377130)
[»] scaffold0002 (4 HSPs)
scaffold0002 (1-62)||(302721-302782)
scaffold0002 (179-222)||(302929-302972)
scaffold0002 (1-56)||(302739-302794)
scaffold0002 (16-59)||(302718-302761)
[»] chr7 (10 HSPs)
chr7 (1-62)||(9466399-9466460)
chr7 (16-62)||(16396755-16396801)
chr7 (16-62)||(30373252-30373298)
chr7 (179-222)||(9466589-9466632)
chr7 (179-222)||(16396535-16396578)
chr7 (1-56)||(16396743-16396798)
chr7 (179-222)||(30373032-30373075)
chr7 (1-56)||(30373240-30373295)
chr7 (1-56)||(9466417-9466472)
chr7 (16-59)||(9466396-9466439)
[»] chr6 (3 HSPs)
chr6 (3-62)||(9139699-9139758)
chr6 (180-222)||(9139509-9139551)
chr6 (1-56)||(9139687-9139742)
[»] chr1 (5 HSPs)
chr1 (1-59)||(5632394-5632452)
chr1 (1-59)||(5632412-5632470)
chr1 (179-222)||(5632201-5632244)
chr1 (1-56)||(5632379-5632434)
chr1 (16-59)||(5632430-5632473)
[»] chr2 (6 HSPs)
chr2 (7-62)||(22946216-22946271)
chr2 (16-62)||(12380472-12380518)
chr2 (1-56)||(12380475-12380530)
chr2 (179-222)||(12380662-12380705)
chr2 (179-222)||(22946400-22946443)
chr2 (1-56)||(22946228-22946283)
[»] scaffold0595 (3 HSPs)
scaffold0595 (179-222)||(10015-10058)
scaffold0595 (16-62)||(9793-9839)
scaffold0595 (1-50)||(9796-9845)


Alignment Details
Target: scaffold0029 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25978 - 26039
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25978 ctcaaataccgcaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 26039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25996 - 26051
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  25996 ctcaaataccacaatatcctcaaataccacaatatcctcaattcccacaaaatcct 26051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 26187 - 26229
Alignment:
Q  180 cgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26187 cgaccaccaagaatgccgattaacccaataccagtcacctatg 26229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 25975 - 26018
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  25975 atcctcaaataccgcaatatcctcaaataccacaatatcctcaa 26018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11947752 - 11947691
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11947752 ctcaaataccacaatatcctcaaataccacaataccctcaaataccacaatatcctcaattc 11947691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 37003971 - 37003912
Alignment:
Q  3 caaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37003971 caaatgccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 37003912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17953916 - 17953977
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17953916 ctcaaataccgcaatatcctcaaataccgcaatatcctcaaataccacaatatcctcaattc 17953977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36379319 - 36379258
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  36379319 ctcaaataccacaatatccccaaatgccacaatatcctcaaataccacaatatcctcaattc 36379258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37003991 - 37003933
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  37003991 ctcaaataccacaatatccccaaatgccacaatatcctcaaataccacaatatcctcaa 37003933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 31517121 - 31517167
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31517121 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 31517167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 5443366 - 5443323
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5443366 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 5443323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 11947559 - 11947516
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11947559 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 11947516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31517124 - 31517179
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  31517124 ctcaaataccacaatatcctcaaataccacaatatcctcaattcccacaaaatcct 31517179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 31517314 - 31517357
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31517314 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 31517357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 36379111 - 36379068
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36379111 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 36379068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 37003765 - 37003722
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37003765 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 37003722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 17954110 - 17954152
Alignment:
Q  180 cgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17954110 cgaccaccaagaatgccgattaacccaataccagtcacctatg 17954152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37003955 - 37003906
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  37003955 ctcaaataccacaatatcctcaaataccacaatatcctcaattcccacaa 37003906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11947734 - 11947679
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||||||||||||||| |||||||||||||||||||||||| | |||||| |||||    
T  11947734 ctcaaataccacaataccctcaaataccacaatatcctcaattcccacaaaatcct 11947679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 11947755 - 11947712
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  11947755 atcctcaaataccacaatatcctcaaataccacaataccctcaa 11947712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 15787868 - 15787825
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  15787868 tcgaccaccaagaatgccgattaacccaataccggtcacctatg 15787825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17953934 - 17953989
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  17953934 ctcaaataccgcaatatcctcaaataccacaatatcctcaattcccacaaaatcct 17953989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 36379299 - 36379252
Alignment:
Q  3 caaataccacaatatcctcaaataccacaatatcctcaaataccacaa 50  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  36379299 caaatgccacaatatcctcaaataccacaatatcctcaattcccacaa 36379252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 36379322 - 36379279
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    |||||||||||||||||||||| ||||| |||||||||||||||    
T  36379322 atcctcaaataccacaatatccccaaatgccacaatatcctcaa 36379279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 37003994 - 37003951
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    |||||||||||||||||||||| ||||| |||||||||||||||    
T  37003994 atcctcaaataccacaatatccccaaatgccacaatatcctcaa 37003951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 5443556 - 5443510
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||  |||| |||||||||||||||||||||||||||||||||    
T  5443556 atcctcacttaccgcaatatcctcaaataccacaatatcctcaattc 5443510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 5443547 - 5443498
Alignment:
Q  7 taccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  5443547 taccgcaatatcctcaaataccacaatatcctcaattcccacaaaatcct 5443498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 15788073 - 15788033
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||||||||||||||||||||||||| | |||||| |||||    
T  15788073 atcctcaaataccacaatatcctcaattcccacaaaatcct 15788033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 15788073 - 15788045
Alignment:
Q  34 atcctcaaataccacaatatcctcaattc 62  Q
    |||||||||||||||||||||||||||||    
T  15788073 atcctcaaataccacaatatcctcaattc 15788045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5954300 - 5954239
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5954300 ctcaaataccacaatatcctcaaaaaccacaatatcctcaaataccacaatatcctcaattc 5954239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 46377310 - 46377353
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46377310 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 46377353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 5954091 - 5954049
Alignment:
Q  180 cgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5954091 cgaccaccaagaatgccgattaacccaataccagtcacctatg 5954049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 46377087 - 46377133
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  46377087 atcctcaaataccgcaatatcctcaaataccacaatatcctcaattc 46377133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5954282 - 5954227
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||||| |||||||||||||||||||||||||||||||||| | |||||| |||||    
T  5954282 ctcaaaaaccacaatatcctcaaataccacaatatcctcaattcccacaaaatcct 5954227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5954303 - 5954260
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  5954303 atcctcaaataccacaatatcctcaaaaaccacaatatcctcaa 5954260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46377090 - 46377130
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaa 41  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  46377090 ctcaaataccgcaatatcctcaaataccacaatatcctcaa 46377130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 302721 - 302782
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  302721 ctcaaataccgcaatatcctcaaataccgcaatatcctcaaataccacaatatcctcaattc 302782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 302929 - 302972
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  302929 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 302972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 302739 - 302794
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  302739 ctcaaataccgcaatatcctcaaataccacaatatcctcaattcccacaaaatcct 302794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 302718 - 302761
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  302718 atcctcaaataccgcaatatcctcaaataccgcaatatcctcaa 302761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9466399 - 9466460
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9466399 ctcaaataccgcaatatcctcaaataccgcaatatcctcaaataccacaatatcctcaattc 9466460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 16396801 - 16396755
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16396801 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 16396755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 30373298 - 30373252
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30373298 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 30373252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 9466589 - 9466632
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9466589 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 9466632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 16396578 - 16396535
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16396578 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 16396535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16396798 - 16396743
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  16396798 ctcaaataccacaatatcctcaaataccacaatatcctcaattcccacaaaatcct 16396743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 30373075 - 30373032
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30373075 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 30373032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30373295 - 30373240
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  30373295 ctcaaataccacaatatcctcaaataccacaatatcctcaattcccacaaaatcct 30373240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9466417 - 9466472
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  9466417 ctcaaataccgcaatatcctcaaataccacaatatcctcaattcccacaaaatcct 9466472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 9466396 - 9466439
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  9466396 atcctcaaataccgcaatatcctcaaataccgcaatatcctcaa 9466439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 9139758 - 9139699
Alignment:
Q  3 caaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9139758 caaataccgcaatatcctcaaataccgcaatatcctcaaataccacaatatcctcaattc 9139699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 9139551 - 9139509
Alignment:
Q  180 cgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9139551 cgaccaccaagaatgccgattaacccaataccagtcacctatg 9139509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9139742 - 9139687
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||||| |||||    
T  9139742 ctcaaataccgcaatatcctcaaataccacaatatcctcaattcccacaaaatcct 9139687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5632452 - 5632394
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5632452 ctcaagtaccacaatatcctcaagtaccacaatatcctcaaataccacaatatcctcaa 5632394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5632470 - 5632412
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  5632470 ctcaaataccacaatatcctcaagtaccacaatatcctcaagtaccacaatatcctcaa 5632412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 5632244 - 5632201
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5632244 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 5632201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5632434 - 5632379
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  5632434 ctcaagtaccacaatatcctcaaataccacaatatcctcaactcccacaaaatcct 5632379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5632473 - 5632430
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaa 59  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  5632473 atcctcaaataccacaatatcctcaagtaccacaatatcctcaa 5632430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 22946216 - 22946271
Alignment:
Q  7 taccacaatatcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22946216 taccgcaatatcctcagataccacaatatcctcaaataccacaatatcctcaattc 22946271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 12380472 - 12380518
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12380472 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 12380518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12380475 - 12380530
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  12380475 ctcaaataccacaatatcctcaaataccacaatatcctcaattcccacaaaatcct 12380530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 12380662 - 12380705
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12380662 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 12380705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 22946400 - 22946443
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22946400 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 22946443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22946228 - 22946283
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaatatcct 56  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  22946228 ctcagataccacaatatcctcaaataccacaatatcctcaattcccacaaaatcct 22946283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 10015 - 10058
Alignment:
Q  179 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10015 tcgaccaccaagaatgccgattaacccaataccagtcacctatg 10058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 9793 - 9839
Alignment:
Q  16 atcctcaaataccacaatatcctcaaataccacaatatcctcaattc 62  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  9793 atcctcaaataccgcaatatcctcaaataccacaatatcctcaattc 9839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9796 - 9845
Alignment:
Q  1 ctcaaataccacaatatcctcaaataccacaatatcctcaaataccacaa 50  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  9796 ctcaaataccgcaatatcctcaaataccacaatatcctcaattcccacaa 9845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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