View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_126 (Length: 208)
Name: NF1242_high_126
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_126 |
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Alignment Details
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 30902829 - 30902782
Alignment:
| Q |
83 |
aattattaaaaacaaacattttcctaataacatgactagaatattatt |
130 |
Q |
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| T |
30902829 |
aattattaaaaacaaacattttcctaataacatgactagaatattatt |
30902782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30902916 - 30902874
Alignment:
| Q |
1 |
tacctcaattattcaacttcccaaaacacaacacaacataaca |
43 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30902916 |
tacctcaattattcaacttcccaaaacacaacacaacacaaca |
30902874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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