View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_17 (Length: 500)
Name: NF1242_high_17
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 64 - 432
Target Start/End: Original strand, 34291860 - 34292228
Alignment:
| Q |
64 |
cagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291860 |
cagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccgccacattcctttgcaacctcttttgctattggattgatatc |
34291959 |
T |
|
| Q |
164 |
ttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattt |
263 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291960 |
atttctatctacaacttcccctcacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattt |
34292059 |
T |
|
| Q |
264 |
tggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatcccaca |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292060 |
tggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatcccaca |
34292159 |
T |
|
| Q |
364 |
catcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc |
432 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292160 |
catcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc |
34292228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 66 - 420
Target Start/End: Original strand, 34566357 - 34566711
Alignment:
| Q |
66 |
gacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatctt |
165 |
Q |
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| T |
34566357 |
gacttcccttcattacttagtgctcttccaactgtcacaattgcaagaggcaagccaccacattcctttgcaacctcacttgctattgggttgatatcat |
34566456 |
T |
|
| Q |
166 |
ttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattttg |
265 |
Q |
| |
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| ||||||||| | | ||||||| ||||||||| ||||||||||| |||||||| ||||| || ||||||||||| | || ||||||| |||| |
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| T |
34566457 |
atgtatctacaattccacctgacatctctcgaaatagataccaagcctcatcctccgacaacacagaaacttgaaaattcacattgcatcccaagttttt |
34566556 |
T |
|
| Q |
266 |
gcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatcccacaca |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566557 |
gcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatcccacaca |
34566656 |
T |
|
| Q |
366 |
tcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
420 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34566657 |
tcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
34566711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 34371825 - 34371746
Alignment:
| Q |
84 |
agtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
163 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
34371825 |
agtgctcgtccaactgttgcaattgcaaggggcaaaccaccacattcccttgcaacctcacttgctattggattgatatc |
34371746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 34554723 - 34554776
Alignment:
| Q |
103 |
caattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggat |
156 |
Q |
| |
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|||| ||||| || ||||| ||||||||||||||||| | |||||||||||||| |
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| T |
34554723 |
caatagcaagaggcaagcctccacattcctttgcaacttgttttgctattggat |
34554776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 64 - 367
Target Start/End: Original strand, 15896045 - 15896342
Alignment:
| Q |
64 |
cagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
163 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| |||| |||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
15896045 |
cagacttcccttcaatgcttagtgctcttccaactgtcacaattgcaaggggcaagccaccacatgcctttgcaacctctcttgctattggattgatatc |
15896144 |
T |
|
| Q |
164 |
ttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccatattt |
263 |
Q |
| |
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| | | | |||||| || |||| || ||| |||| || ||||||||||||||| ||| | ||| ||||||||||| | | | |||||||||||| |
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| T |
15896145 |
atgtttgtttacaacatctcctgccatttcttgaaataggctccaagcttcatcctccgacaatacagggacttgaaaattcactctgcatcccatattt |
15896244 |
T |
|
| Q |
264 |
tggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatcccaca |
363 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||| |||||| || ||||||||||||| |
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| T |
15896245 |
tggcacactttttgatcccgtgatgtgaacaatattttgcaatatttatcacgttct------tgaagtccaatacgctcaaaatcaagaatatcccaca |
15896338 |
T |
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