View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_20 (Length: 468)
Name: NF1242_high_20
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 22364963 - 22364530
Alignment:
| Q |
15 |
caacgatatttttggacatagttcaaatatcacattttttatgaccaaaccatgatattttcagttttagaagtttagaatagggatagggattgtgttt |
114 |
Q |
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| T |
22364963 |
caacgacatttttggacatagttcaaatatcacattttttatgaccaaaccatgatattttcagttttggaagtttagaatagggatagggattgtgttt |
22364864 |
T |
|
| Q |
115 |
gtagttacactaatcaatttgaggaatgactcttctttgtgcaatattttattctgaattctttctaaatatatttatagtgaaaaatatatatgacaaa |
214 |
Q |
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| T |
22364863 |
gtagttacactaatcaatttgaggaatgactcttctttgtgcaatattttattttgaattctttttaaatatatttatagtgacaaatatatatgacaaa |
22364764 |
T |
|
| Q |
215 |
ttgttaatcttttgctcacaattgtttgaaattaaattattatttggagtctatgcattaaatttgttgccaacattgtgtattgggtctatacatttca |
314 |
Q |
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| T |
22364763 |
ttgttaatcttttgctcacaattgtttgaaattaaattattatttggagtctattcattaaatttgttgccaacattgtgtattgggtctatacatttca |
22364664 |
T |
|
| Q |
315 |
ttgtgtaagagtttatgtttatgatgatgataattg-----------------aaacctcttattcatagttaagagtttgtttgaattgtgaaaatctt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22364663 |
ttgtgtaagagtttatgtttatgatgatgataattgaaatgaaaccatctatcaaacctctaattcatagttaagagtttgtttgaattgtgaaaatctt |
22364564 |
T |
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| Q |
398 |
gaaacttatgtgtatttaaacaaacttatgaagg |
431 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
22364563 |
gaaacttatgtgtatctaaacaaacttatgaagg |
22364530 |
T |
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