View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1242_high_24 (Length: 430)
Name: NF1242_high_24
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 206 - 426
Target Start/End: Original strand, 48668685 - 48668905
Alignment:
| Q |
206 |
gaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatggatcg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668685 |
gaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatggatcg |
48668784 |
T |
|
| Q |
306 |
atataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaaaagat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668785 |
atataaatgtccaaatatctttactaattttctaattaagaatacaatagagtaagagtaaggaaagatggaaaaacagatagtatagtaataaaaagat |
48668884 |
T |
|
| Q |
406 |
agcagttccccctcccctatg |
426 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
48668885 |
agcagttccccctcctctatg |
48668905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 48668507 - 48668656
Alignment:
| Q |
28 |
gataccacgtcttcatacaaaatctcaagacaagggatcgcgtcccttgtatattcttcaattaactcattcctaattgatgcgagactaaccattaaca |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668507 |
gataccacgtcttcatacaaaatctcaagacaagggatcacgtcccttgtatattcttcaattaactcattcctaattgatgcgagactaaccattaaca |
48668606 |
T |
|
| Q |
128 |
ctttaactgcaacattttgggagcggaaaatggagaagttgggatataac |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668607 |
ctttaactgcaacattttgggagcggaaaatggagaagttgggatataac |
48668656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University