View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_26 (Length: 427)
Name: NF1242_high_26
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 56097602 - 56097233
Alignment:
| Q |
30 |
cttatgcatgcatgcacgacacttgtttcattccaaaatatacaatcacaattcacaacccatttaggccatcatcttctttttcaaggtttccgttacc |
129 |
Q |
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| T |
56097602 |
cttatgcatgcatgcacgacacttgttccattccaaaatatacaatcacaattcacaacccatttacgccatcatcttctttttcatggtttccgttacc |
56097503 |
T |
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| Q |
130 |
ttcctttacttgcacaacaaaacaaaggtggctggattgatcgatggtgatatggtagatcacttggacgaaagaaaatacagagaaataaatcttgttt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
56097502 |
ttcctttacttgcacaacaaaacaaaggtggctggagtgatcgatggtggtatggtagatcacttggacgaaagaaaatacagataaataaatcttgttt |
56097403 |
T |
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| Q |
230 |
aaacagagaaaacaagaattcagaccagatactaaatatcaacaaattgatcattcgactaaattaaagatgtctcaacaaaatattatatagtttgaat |
329 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56097402 |
aaacagagaaaacaagaattcagaccagatacaaaatatcaacaaattgatcattcgactaaattaaagatgtctcaacaaaatatta------------ |
56097315 |
T |
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| Q |
330 |
agtagtatataagagagatgaatatcatgcatgcatctgtcactaccatacacgcacactgaaatatattatataccttaaagtataat |
418 |
Q |
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| T |
56097314 |
-------tataagagagatgaatatcatgcatgcatctgtcactaccatacacgcacactgaaatatattatataccttaaagtataat |
56097233 |
T |
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