View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_high_29 (Length: 395)

Name: NF1242_high_29
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_high_29
NF1242_high_29
[»] chr3 (2 HSPs)
chr3 (197-301)||(11817715-11817819)
chr3 (218-301)||(41759116-41759199)
[»] scaffold0003 (1 HSPs)
scaffold0003 (197-301)||(190742-190846)
[»] scaffold0316 (1 HSPs)
scaffold0316 (210-301)||(5931-6020)
[»] scaffold0356 (1 HSPs)
scaffold0356 (218-301)||(4808-4891)
[»] chr8 (2 HSPs)
chr8 (218-301)||(14107386-14107469)
chr8 (218-301)||(33857134-33857217)
[»] chr4 (1 HSPs)
chr4 (218-301)||(31925852-31925935)
[»] chr1 (1 HSPs)
chr1 (218-301)||(16046063-16046146)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 197 - 301
Target Start/End: Original strand, 11817715 - 11817819
Alignment:
Q  197 caagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaagga 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11817715 caagacctctagccaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtcccacacaaagtcatagggcgaagga 11817814  T
Q  297 tttga 301  Q
    |||||    
T  11817815 tttga 11817819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 41759199 - 41759116
Alignment:
Q  218 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga 301  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |||||||||||||||||| |||||||||||    
T  41759199 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttga 41759116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 197 - 301
Target Start/End: Original strand, 190742 - 190846
Alignment:
Q  197 caagacctctagtcaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaagga 296  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  190742 caagacctctagccaattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtcccacagaaagtcatagggcgaagga 190841  T
Q  297 tttga 301  Q
    |||||    
T  190842 tttga 190846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 5931 - 6020
Alignment:
Q  210 caattttattgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga 301  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  5931 caattttattgattcattaaaaccttct--aaagatttagaaagtttgtctctattcatgtcccacacaaagtcatagagtgaaggatttga 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 4891 - 4808
Alignment:
Q  218 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga 301  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | ||||||||||||||||||||||||||||||    
T  4891 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggcgaaggatttga 4808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 14107469 - 14107386
Alignment:
Q  218 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga 301  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | ||||||||||||||||||||||||||||||    
T  14107469 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggcgaaggatttga 14107386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 33857217 - 33857134
Alignment:
Q  218 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga 301  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |||||||||||||||||| |||||||||||    
T  33857217 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttga 33857134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 31925852 - 31925935
Alignment:
Q  218 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga 301  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | |||||||||||||||||| |||||||||||    
T  31925852 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacaaagtcatagggtgaaggatttga 31925935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 16046063 - 16046146
Alignment:
Q  218 ttgattcattaaaaccatctctaaagatttagaaagtttgtctctattcatgtgccacacaaagtcatagggcgaaggatttga 301  Q
    |||||||||||||||||| |||||||||| ||||| || |||| | ||||| | ||||||| ||||||||||||||| ||||||    
T  16046063 ttgattcattaaaaccatttctaaagattaagaaaattggtctatgttcatatcccacacacagtcatagggcgaagaatttga 16046146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University