View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_42 (Length: 336)
Name: NF1242_high_42
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 37041312 - 37041623
Alignment:
| Q |
18 |
aaagtattttgaatcggtgattaacatggattcatcaccagcaactccagcatggcgccagggaccagaagagaagccagttttatgcaatgcatgtgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041312 |
aaagtattttgaatcggtgattaacatggattcatcaccagcaactccagcatggcgccagggaccagaagagaagccagttttatgcaatgcatgtgga |
37041411 |
T |
|
| Q |
118 |
ctaagataccaaaactggggagaccttgctgatcattctctcaaacgttgttttccaaaagaacttattgctaacagtggcaacagtagcaacaataatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041412 |
ctaagataccaaaactggggagaccttgctgatcattctctcaaacgttgttttccaaaagaacttattgctaacagtggcaacagtagcaacaataatc |
37041511 |
T |
|
| Q |
218 |
tcaaagaaagttcttcaaccatcgttgtttctgattctgataatggtatgtgtttatactagttctagtcattttcactcttttctttacaatgctatat |
317 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37041512 |
tcaaagaaagttcttcaaccattgatgtttctgattctgataatggtatgtgtttatactagttctagtcattttcactcttttctttacaatgctatct |
37041611 |
T |
|
| Q |
318 |
actacttctgtg |
329 |
Q |
| |
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||||||| |||| |
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| T |
37041612 |
actacttttgtg |
37041623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 37024334 - 37024645
Alignment:
| Q |
18 |
aaagtattttgaatcggtgattaacatggattcatcaccagcaactccagcatggcgccagggaccagaagagaagccagttttatgcaatgcatgtgga |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37024334 |
aaagtattttgaatcggtgattaacatggattcatcaccagcaactccagcatggcgccagggaccagaagagaaaccagttttatgcaatgcatgtgga |
37024433 |
T |
|
| Q |
118 |
ctaagataccaaaactggggagaccttgctgatcattctctcaaacgttgttttccaaaagaacttattgctaacagtggcaacagtagcaacaataatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| || |
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| T |
37024434 |
ctaagataccaaaactggggagaccttgctgatcattcactcaaacgtttgtttccaaaagaacttgttgctaatagtggcaacagtagcaacaacggtc |
37024533 |
T |
|
| Q |
218 |
tcaaagaaagttcttcaaccatcgttgtttctgattctgataatggtatgtgtttatactagttctagtcattttcactcttttctttacaatgctatat |
317 |
Q |
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||| |||||||||||||||||| | |||||||||||| || ||||| |||||||||||||||| |||| |||||||||||| ||||||| || | ||||| |
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| T |
37024534 |
tcatagaaagttcttcaaccattgatgtttctgattcagaaaatggcatgtgtttatactagtactagccattttcactctcttctttataacgatatat |
37024633 |
T |
|
| Q |
318 |
actacttctgtg |
329 |
Q |
| |
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||||||| |||| |
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| T |
37024634 |
actacttttgtg |
37024645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 37019384 - 37019672
Alignment:
| Q |
19 |
aagtattttgaatcggtgattaacatggattcatcaccagcaactccagcatggcgccagggaccagaagagaagccagttttatgcaatgcatgtggac |
118 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37019384 |
aagtgttttcaatcggtgattaaaatggattcatcaccagcaactccagtatggcgccaaggaccagaagagaagccagttttatgcaatgcatgtggaa |
37019483 |
T |
|
| Q |
119 |
taagataccaaaactggggagaccttgctgatcattctctcaaacgttgttttccaaaagaacttattgcta---acagtggcaacagtagcaacaataa |
215 |
Q |
| |
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|||||||| |||| ||||| |||||| || |||||||||||||||||||||||||||||||| ||| || ||||||||||| ||| | ||||| |
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| T |
37019484 |
caagataccgaaacgggggaaaccttgaagaacattctctcaaacgttgttttccaaaagaactcgttgttagatgcagtggcaacattagaagcaatag |
37019583 |
T |
|
| Q |
216 |
tctcaaagaaagttcttcaaccatcgttgtttctgattctgataatggtatgtgtttatactagttctagtcattttcactcttttctttacaat |
310 |
Q |
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|||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||| |
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| T |
37019584 |
tctcaaagaaagttcttcaaccattgatgtttctgattcagataatggtatgtg------ctagtactagccattttcactcttttctttacaat |
37019672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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