View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_high_47 (Length: 330)

Name: NF1242_high_47
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_high_47
NF1242_high_47
[»] chr1 (22 HSPs)
chr1 (115-318)||(48390152-48390342)
chr1 (33-82)||(5574280-5574329)
chr1 (35-83)||(41564903-41564951)
chr1 (33-84)||(12990490-12990541)
chr1 (33-112)||(48390098-48390175)
chr1 (33-83)||(8577523-8577573)
chr1 (33-87)||(31244754-31244808)
chr1 (33-84)||(23400010-23400061)
chr1 (33-83)||(1100217-1100267)
chr1 (33-83)||(21854485-21854535)
chr1 (38-84)||(28457373-28457419)
chr1 (39-84)||(40118742-40118787)
chr1 (43-88)||(49931548-49931593)
chr1 (33-84)||(6396326-6396377)
chr1 (45-84)||(27954242-27954281)
chr1 (46-84)||(16252782-16252820)
chr1 (33-83)||(22674712-22674762)
chr1 (38-84)||(26760561-26760607)
chr1 (44-85)||(25239267-25239308)
chr1 (33-86)||(27578179-27578232)
chr1 (43-87)||(30519656-30519700)
chr1 (46-82)||(50460735-50460771)
[»] chr6 (9 HSPs)
chr6 (33-83)||(34792022-34792072)
chr6 (35-84)||(27790258-27790307)
chr6 (46-86)||(32135454-32135494)
chr6 (43-86)||(19712352-19712395)
chr6 (46-84)||(16121162-16121200)
chr6 (46-83)||(2165323-2165360)
chr6 (46-83)||(2176956-2176993)
chr6 (41-85)||(6997579-6997623)
chr6 (46-82)||(16865565-16865601)
[»] chr2 (26 HSPs)
chr2 (33-83)||(34141442-34141492)
chr2 (33-85)||(5852472-5852524)
chr2 (33-80)||(38027636-38027683)
chr2 (33-83)||(12256901-12256951)
chr2 (33-80)||(28679131-28679178)
chr2 (33-84)||(44897625-44897676)
chr2 (33-83)||(30339993-30340043)
chr2 (32-86)||(35203769-35203823)
chr2 (33-84)||(18749384-18749435)
chr2 (33-83)||(11152720-11152770)
chr2 (33-83)||(12208442-12208492)
chr2 (33-83)||(19637229-19637279)
chr2 (33-83)||(19835822-19835872)
chr2 (33-83)||(26387880-26387930)
chr2 (33-83)||(27529529-27529579)
chr2 (33-85)||(11728142-11728194)
chr2 (33-89)||(25094346-25094402)
chr2 (39-86)||(11126460-11126507)
chr2 (33-80)||(17999749-17999796)
chr2 (44-83)||(43820773-43820812)
chr2 (46-84)||(27538939-27538977)
chr2 (33-83)||(40721771-40721821)
chr2 (46-83)||(13881106-13881143)
chr2 (46-83)||(14021231-14021268)
chr2 (46-83)||(27329132-27329169)
chr2 (46-86)||(45202155-45202195)
[»] chr3 (27 HSPs)
chr3 (33-85)||(30664501-30664553)
chr3 (33-83)||(14839066-14839116)
chr3 (38-82)||(44689793-44689837)
chr3 (33-84)||(54233489-54233540)
chr3 (33-83)||(2280177-2280227)
chr3 (33-83)||(29555859-29555909)
chr3 (33-83)||(36301229-36301279)
chr3 (45-83)||(49361857-49361895)
chr3 (39-80)||(17118400-17118441)
chr3 (46-83)||(50745560-50745597)
chr3 (39-83)||(9159063-9159107)
chr3 (39-83)||(42888799-42888843)
chr3 (39-83)||(48205045-48205089)
chr3 (32-84)||(55264816-55264868)
chr3 (39-86)||(38296689-38296736)
chr3 (32-83)||(45517677-45517728)
chr3 (43-93)||(19150350-19150400)
chr3 (39-81)||(38471644-38471686)
chr3 (44-85)||(5393866-5393907)
chr3 (38-83)||(9027613-9027658)
chr3 (42-87)||(14847548-14847593)
chr3 (46-83)||(29057659-29057696)
chr3 (46-83)||(29846914-29846951)
chr3 (39-83)||(7351665-7351709)
chr3 (39-83)||(33971883-33971927)
chr3 (33-85)||(47141621-47141673)
chr3 (39-87)||(48944737-48944785)
[»] chr8 (25 HSPs)
chr8 (33-83)||(35701848-35701898)
chr8 (33-86)||(21649189-21649242)
chr8 (33-84)||(27300345-27300396)
chr8 (33-83)||(18549979-18550029)
chr8 (33-83)||(23708976-23709026)
chr8 (39-83)||(22203242-22203286)
chr8 (46-85)||(6243043-6243082)
chr8 (33-83)||(28713093-28713143)
chr8 (33-83)||(28720440-28720490)
chr8 (33-83)||(28728082-28728132)
chr8 (38-83)||(5742683-5742728)
chr8 (45-86)||(36675333-36675374)
chr8 (46-83)||(37471654-37471691)
chr8 (39-83)||(4148682-4148726)
chr8 (39-83)||(34578404-34578448)
chr8 (44-83)||(20996179-20996218)
chr8 (33-84)||(34838291-34838342)
chr8 (33-83)||(28156203-28156253)
chr8 (33-83)||(32674253-32674303)
chr8 (46-83)||(9306029-9306066)
chr8 (46-87)||(13884194-13884235)
chr8 (46-83)||(13924022-13924059)
chr8 (42-83)||(42688427-42688468)
chr8 (33-85)||(10591894-10591946)
chr8 (39-83)||(37784401-37784445)
[»] chr7 (27 HSPs)
chr7 (33-83)||(48639404-48639454)
chr7 (33-83)||(27704435-27704485)
chr7 (33-83)||(41538482-41538532)
chr7 (33-79)||(41910206-41910252)
chr7 (33-85)||(47944980-47945033)
chr7 (33-85)||(47950410-47950463)
chr7 (38-85)||(11789717-11789764)
chr7 (33-80)||(45335865-45335912)
chr7 (38-84)||(2600560-2600606)
chr7 (36-82)||(23034337-23034383)
chr7 (33-87)||(30538622-30538676)
chr7 (46-84)||(37848643-37848681)
chr7 (42-91)||(27383953-27384002)
chr7 (39-83)||(1709284-1709328)
chr7 (33-80)||(640395-640442)
chr7 (33-83)||(11070228-11070278)
chr7 (46-84)||(25272601-25272639)
chr7 (46-84)||(27866560-27866598)
chr7 (33-83)||(28548242-28548292)
chr7 (42-84)||(40207830-40207872)
chr7 (45-83)||(48522156-48522194)
chr7 (45-82)||(34349060-34349097)
chr7 (42-83)||(42552899-42552940)
chr7 (39-83)||(35491438-35491482)
chr7 (33-85)||(37969929-37969981)
chr7 (33-85)||(41458921-41458973)
chr7 (33-89)||(44175539-44175595)
[»] chr5 (22 HSPs)
chr5 (33-83)||(18729310-18729360)
chr5 (33-83)||(39032625-39032675)
chr5 (33-83)||(3031834-3031884)
chr5 (39-83)||(25585483-25585527)
chr5 (33-83)||(12891117-12891167)
chr5 (33-83)||(24330003-24330053)
chr5 (33-83)||(29765830-29765880)
chr5 (33-83)||(34693237-34693287)
chr5 (33-82)||(11432625-11432674)
chr5 (33-82)||(37821146-37821195)
chr5 (39-83)||(14522991-14523035)
chr5 (39-82)||(30103478-30103521)
chr5 (46-85)||(38387608-38387647)
chr5 (46-84)||(8442169-8442207)
chr5 (33-83)||(20985550-20985600)
chr5 (33-83)||(35578860-35578910)
chr5 (46-83)||(12203158-12203195)
chr5 (38-83)||(31626102-31626147)
chr5 (46-83)||(32732141-32732178)
chr5 (46-78)||(7080546-7080578)
chr5 (33-81)||(14126418-14126466)
chr5 (43-87)||(31748332-31748376)
[»] chr4 (24 HSPs)
chr4 (33-83)||(50291282-50291332)
chr4 (35-83)||(23133560-23133608)
chr4 (38-86)||(43307395-43307443)
chr4 (44-87)||(6256481-6256524)
chr4 (33-83)||(36110134-36110184)
chr4 (33-82)||(38960681-38960730)
chr4 (33-68)||(4877982-4878017)
chr4 (32-83)||(29577456-29577507)
chr4 (33-83)||(1987734-1987784)
chr4 (33-83)||(4577557-4577607)
chr4 (46-84)||(7795024-7795062)
chr4 (33-83)||(15638161-15638211)
chr4 (45-83)||(22893869-22893907)
chr4 (45-83)||(22945537-22945575)
chr4 (46-84)||(24310544-24310582)
chr4 (33-83)||(26442411-26442461)
chr4 (46-84)||(28899238-28899276)
chr4 (33-83)||(29863551-29863601)
chr4 (33-83)||(31318753-31318803)
chr4 (33-83)||(46355314-46355364)
chr4 (33-83)||(51107462-51107512)
chr4 (46-83)||(1868916-1868953)
chr4 (46-83)||(37731926-37731963)
chr4 (39-83)||(35037609-35037653)
[»] scaffold0024 (1 HSPs)
scaffold0024 (33-80)||(48657-48704)
[»] scaffold0014 (1 HSPs)
scaffold0014 (33-83)||(145061-145111)
[»] scaffold0514 (1 HSPs)
scaffold0514 (33-84)||(1866-1917)
[»] scaffold0651 (1 HSPs)
scaffold0651 (33-83)||(4867-4917)
[»] scaffold0286 (1 HSPs)
scaffold0286 (46-83)||(17049-17086)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 115 - 318
Target Start/End: Original strand, 48390152 - 48390342
Alignment:
Q  115 atttacagcatcatacaagggaaatatgtgtaattcatcccatcccaattcacaaattgcgcatcatatcttcttttatgatatagaacatgtaggaaat 214  Q
    |||||||||||||||||||||||||||||||||     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48390152 atttacagcatcatacaagggaaatatgtgtaa-----ctcatcccaattcacaaattgcgcatcatatcttcttttatgatatagaacatgtaggaaat 48390246  T
Q  215 cgaaatcgaaatcgaaatttatacagtcttatagttttccagttttcctctcttttactgtttcaacaaatgcatgttgatactctcttcaagttgatga 314  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48390247 cgaaatcgaaatcgaaatttatacagtcttat--------agttttcctctcttttactgtttcaacaaatgcatgttgatactctctccaagttgatga 48390338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 5574280 - 5574329
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5574280 agaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttct 5574329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 41564903 - 41564951
Alignment:
Q  35 aaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  41564903 aaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 41564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 12990490 - 12990541
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  12990490 agaaggttgtacgaaagttgtacaaaaatggttgtacaaatatcatttctca 12990541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 48390098 - 48390175
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaagatttacaacatcagaaaagggaaa 112  Q
    ||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||| ||||||| ||||| | ||||||||    
T  48390098 agaagtttgtacaaaagttgtacaaaaatggttgtacaa-tataatttctcaaaa-atttacagcatcatacaagggaaa 48390175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 8577523 - 8577573
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  8577523 agaaggttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 8577573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 31244754 - 31244808
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    |||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  31244754 agaatgttgtacaaaaattgtacaaaaatgattatacaaatatcatttctcaaaa 31244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 23400010 - 23400061
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||| |||||||||||||||| ||||||| |||||||| ||||||||||||    
T  23400010 agaagattgtacaaaagttgtataaaaatggttgtacaaatatcatttctca 23400061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 1100267 - 1100217
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| ||||||||||||| |||||||| |||||||||||    
T  1100267 agaaagttgtacaaaaattgtacaaaaatggttgtacaaatatcatttctc 1100217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 21854485 - 21854535
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  21854485 agaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctc 21854535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 28457373 - 28457419
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  28457373 gttgtataaaagttgtaccaaaatgattgtacaaatatcatttctca 28457419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 40118742 - 40118787
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||    
T  40118742 ttgtacaaaaattatacaaaaatgattgtacaaatatcatttctca 40118787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 49931593 - 49931548
Alignment:
Q  43 acaaaagttgtacaaaaatgattgtacaactatcatttctcaaaag 88  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||    
T  49931593 acaaaagttgttaaaaaatgattgtacaaatatcatttctcaaaag 49931548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 6396377 - 6396326
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||| |||||||||||||||||| |||||| |||||| | ||||||||||||    
T  6396377 agaaagttgtacaaaagttgtaccaaaatggttgtaccaatatcatttctca 6396326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 27954281 - 27954242
Alignment:
Q  45 aaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  27954281 aaaagttgtacaaaaatgattgtataaatatcatttctca 27954242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 16252782 - 16252820
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  16252782 aaagttgtacaaaaatggttgtacaaatatcatttctca 16252820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 22674762 - 22674712
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| ||||||||||||  |||||||| |||||||||||    
T  22674762 agaaagttgtacaaaaattgtacaaaaatagttgtacaaatatcatttctc 22674712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 26760607 - 26760561
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||| ||||||||||||| |||||||| ||||| ||||||    
T  26760607 gttgtacaaaaattgtacaaaaatggttgtacaaatatcaattctca 26760561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 25239267 - 25239308
Alignment:
Q  44 caaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    ||||||||| |||||||| ||||||||| |||||||||||||    
T  25239267 caaaagttgaacaaaaataattgtacaaatatcatttctcaa 25239308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 27578232 - 27578179
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    |||| |||||||||||||||| | ||| | ||||||||| ||||||||||||||    
T  27578232 agaaagttgtacaaaagttgtcccaaattaattgtacaaatatcatttctcaaa 27578179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 30519656 - 30519700
Alignment:
Q  43 acaaaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    |||||||||||  |||||||||||||||  |||||||||||||||    
T  30519656 acaaaagttgttaaaaaatgattgtacatgtatcatttctcaaaa 30519700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 50460735 - 50460771
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  50460735 aaagttgtacaaaaatggttgtacaaatatcatttct 50460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 34792072 - 34792022
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34792072 agaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34792022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 27790258 - 27790307
Alignment:
Q  35 aaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  27790258 aaggttgtataaaagttgtacaaaaatggttgtacaaatatcatttctca 27790307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 32135454 - 32135494
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  32135454 aaagttgtacaaaaatgattgtacaaatatcatttctcaaa 32135494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 19712395 - 19712352
Alignment:
Q  43 acaaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  19712395 acaaaagttgtacaaaagtgattgtacaaatatcatttctcaaa 19712352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 16121200 - 16121162
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  16121200 aaagttgtacaaaaatggttgtacaaatatcatttctca 16121162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 2165323 - 2165360
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  2165323 aaagttgtacaaaaatggttgtacaaatatcatttctc 2165360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 2176956 - 2176993
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  2176956 aaagttgtacaaaaatggttgtacaaatatcatttctc 2176993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 6997579 - 6997623
Alignment:
Q  41 gtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||||||| || |||||||||| |||||||| |||||||||||||    
T  6997579 gtacaaaaattatacaaaaatggttgtacaaatatcatttctcaa 6997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 16865601 - 16865565
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  16865601 aaagttgtacaaaagtgattgtacaaatatcatttct 16865565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 34141492 - 34141442
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34141492 agaaggttgtacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34141442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 5852524 - 5852472
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  5852524 agaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctcaa 5852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 38027636 - 38027683
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcattt 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38027636 agaaggttgtacaaaagttgtacaaaaatgattgtacaagtatcattt 38027683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 12256951 - 12256901
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  12256951 agaaggttgtacaaaagttatacaaaaatgattgtacaaatatcatttctc 12256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 28679178 - 28679131
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcattt 80  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  28679178 agaatgttgtacaaaagttgtacaaaaatgattgtacaaatatcattt 28679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 44897676 - 44897625
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  44897676 agaaggttgtacgaaagttgtacaaaaatggttgtacaaatatcatttctca 44897625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 30340043 - 30339993
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  30340043 agaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 30339993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 35203769 - 35203823
Alignment:
Q  32 aagaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    ||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  35203769 aagaaagttgtacaaaagttgaacaaaaatggttgtacaaatatcatttctcaaa 35203823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 18749384 - 18749435
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||||||||| || |||||||||| |||||||| ||||||||||||    
T  18749384 agaaggttgtacaaaaattatacaaaaatggttgtacaaatatcatttctca 18749435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 11152720 - 11152770
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||| || || |||||||||||||||| |||||||||||    
T  11152720 agaaggttgtacaaaaattatataaaaatgattgtacaaatatcatttctc 11152770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 12208492 - 12208442
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||| ||||||||||||||||||||| |||||||| |||||||||||    
T  12208492 agaaagttatacaaaagttgtacaaaaatggttgtacaaatatcatttctc 12208442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 19637279 - 19637229
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||| |||||||||| |||||||| |||||||||||    
T  19637279 agaaagttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 19637229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 19835872 - 19835822
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||| |||||||||| |||||||| |||||||||||    
T  19835872 agaaagttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 19835822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 26387880 - 26387930
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||| |||||||||||| |||| |||||||| |||||||||||    
T  26387880 agaaggttgtacgaaagttgtacaagaatggttgtacaaatatcatttctc 26387930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 27529579 - 27529529
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||||||||||||||||| || ||||| |||||||||||    
T  27529579 agaaagttgtacaaaagttgtacaaaaatggttctacaaatatcatttctc 27529529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 11728142 - 11728194
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||| |||||||||||||||||| |||||| ||||||||  ||||||||||||    
T  11728142 agaaagttgtacaaaagttgtaccaaaatggttgtacaaacatcatttctcaa 11728194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 25094402 - 25094346
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaaga 89  Q
    |||| ||||||||||| |||||| |||||| || ||||| |||||||||||||||||    
T  25094402 agaaagttgtacaaaaattgtaccaaaatggttatacaaatatcatttctcaaaaga 25094346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 11126507 - 11126460
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    ||||||||||||| | |||||||| |||||||| ||||||||||||||    
T  11126507 ttgtacaaaagttatgcaaaaatggttgtacaaatatcatttctcaaa 11126460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 17999796 - 17999749
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcattt 80  Q
    |||| ||||||||||||||||||| ||||| |||||||| ||||||||    
T  17999796 agaaagttgtacaaaagttgtacacaaatggttgtacaaatatcattt 17999749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 43820773 - 43820812
Alignment:
Q  44 caaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  43820773 caaaagttgtaaaaaaatgattgtacaaatatcatttctc 43820812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 27538939 - 27538977
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  27538939 aaagttgtacaaaaatggttgtacaaatatcatttctca 27538977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 40721821 - 40721771
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||| ||||||  ||||||| |||||||||||    
T  40721821 agaaagttgtacaaaagttgtaccaaaatggctgtacaaatatcatttctc 40721771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 13881143 - 13881106
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  13881143 aaagttgtacaaaaatgattgtacaaacatcatttctc 13881106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 14021268 - 14021231
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  14021268 aaagttgtacaaaaatgattgtacaaacatcatttctc 14021231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 27329132 - 27329169
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  27329132 aaagttgtaccaaaatgattgtacaaatatcatttctc 27329169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 45202155 - 45202195
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    ||||||||| ||||||| |||||||| ||||||||||||||    
T  45202155 aaagttgtaaaaaaatggttgtacaaatatcatttctcaaa 45202195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 30664553 - 30664501
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  30664553 agaaagttgtacaaaagttgtacaaaaatgattgtacaaatatcatttctcaa 30664501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 14839066 - 14839116
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  14839066 agaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 14839116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 44689837 - 44689793
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  44689837 gttgtacaaaagttgtacaaaaatggttgtacaaatatcatttct 44689793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 54233489 - 54233540
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||| ||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  54233489 agaaagttgtacaaaagttgtaaaaaaatggttgtacaaatatcatttctca 54233540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 2280227 - 2280177
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||| |||||| |||||||| |||||||||||    
T  2280227 agaaagttgtacaaaagttgtactaaaatggttgtacaaatatcatttctc 2280177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 29555859 - 29555909
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||| |||||||||| |||||||| ||| |||||||    
T  29555859 agaaggttgtacaaaagttatacaaaaatggttgtacaaatattatttctc 29555909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 36301229 - 36301279
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||||||||||||||||||| |||||| ||| |||||||    
T  36301229 agaaagttgtacaaaagttgtacaaaaatgatcgtacaaatataatttctc 36301279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 49361857 - 49361895
Alignment:
Q  45 aaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  49361857 aaaagttgtacaaaaatgattgtacaaatatcatttctc 49361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 17118441 - 17118400
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcattt 80  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  17118441 ttgtacaaaagttgtacaaaaatggttgtacaaatatcattt 17118400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 50745597 - 50745560
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||| |||||||||||    
T  50745597 aaagttgtacaaaaatgattgtacaaatatcatttctc 50745560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 9159063 - 9159107
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||    
T  9159063 ttgtacaaaaattgtacaaaaatggttgtacaaatatcatttctc 9159107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 42888799 - 42888843
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||    
T  42888799 ttgtacaaaagttgtacaaaaatggctgtacaaatatcatttctc 42888843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 48205089 - 48205045
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| || ||||||||||||||||||| |||||||||||    
T  48205089 ttgtacaaaaattatacaaaaatgattgtacaaatatcatttctc 48205045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 55264868 - 55264816
Alignment:
Q  32 aagaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||| ||||| ||||||| |||||||||| |||||||| ||||||||||||    
T  55264868 aagaagattgtataaaagttatacaaaaatggttgtacaaatatcatttctca 55264816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 38296689 - 38296736
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    ||||||||||||||||| |||||| |||||||| ||| ||||||||||    
T  38296689 ttgtacaaaagttgtactaaaatggttgtacaaatattatttctcaaa 38296736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 45517677 - 45517728
Alignment:
Q  32 aagaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||| ||| |||||||||| |||||||||| |||||||| |||||||||||    
T  45517677 aagaaagttatacaaaagttatacaaaaatggttgtacaaatatcatttctc 45517728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 19150350 - 19150400
Alignment:
Q  43 acaaaagttgtacaaaaatgattgtacaactatcatttctcaaaagattta 93  Q
    |||||||||||  |||||||||||||||| ||||||||||| ||| |||||    
T  19150350 acaaaagttgttaaaaaatgattgtacaaatatcatttctctaaaaattta 19150400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 38471686 - 38471644
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttc 81  Q
    ||||||||||||||||| |||||| |||||||| |||||||||    
T  38471686 ttgtacaaaagttgtaccaaaatggttgtacaaatatcatttc 38471644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 5393866 - 5393907
Alignment:
Q  44 caaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||||||||||  ||||||||||||||| |||||||||||||    
T  5393866 caaaagttgtaagaaaatgattgtacaaatatcatttctcaa 5393907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 9027658 - 9027613
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| ||||||| |||||||| || ||||||||    
T  9027658 gttgtacaaaagttgtataaaaatggttgtacaaataacatttctc 9027613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 14847548 - 14847593
Alignment:
Q  42 tacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    |||||||||||||| |||||| ||| |||| |||||||||||||||    
T  14847548 tacaaaagttgtaccaaaatggttgcacaaatatcatttctcaaaa 14847593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 29057696 - 29057659
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  29057696 aaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 29846914 - 29846951
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  29846914 aaagttgtacaaaaatggttgtacaaatatcatttctc 29846951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 7351665 - 7351709
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| || |||||||||| |||||||| |||||||||||    
T  7351665 ttgtacaaaaattatacaaaaatggttgtacaaatatcatttctc 7351709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 33971927 - 33971883
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||    
T  33971927 ttgtacaaaagttgtacaagaatggttgtataaatatcatttctc 33971883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 47141621 - 47141673
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||| ||||||||||| || ||| |||||| |||||||| |||||||||||||    
T  47141621 agaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttctcaa 47141673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 48944737 - 48944785
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    |||||||||||||||   |||||| |||||||| |||||||||||||||    
T  48944737 ttgtacaaaagttgttagaaaatggttgtacaaatatcatttctcaaaa 48944785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 35701848 - 35701898
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  35701848 agaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 35701898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 21649189 - 21649242
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  21649189 agaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctcaaa 21649242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 27300396 - 27300345
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  27300396 agaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctca 27300345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 18550029 - 18549979
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  18550029 agaatgttgtacaaaagttatacaaaaatgattgtacaaatatcatttctc 18549979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 23709026 - 23708976
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  23709026 agaaggttgtacaaaagttatacaaaaatggttgtacaaatatcatttctc 23708976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 22203242 - 22203286
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  22203242 ttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 22203286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 6243082 - 6243043
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6243082 aaagttgtacaaaaatgattgtacaaatatcatttctcaa 6243043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 28713143 - 28713093
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  28713143 agaaggttgtataaaagttatacaaaaatggttgtacaaatatcatttctc 28713093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 28720490 - 28720440
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  28720490 agaaggttgtataaaagttatacaaaaatggttgtacaaatatcatttctc 28720440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 28728132 - 28728082
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||| ||||||| |||||||||| |||||||| |||||||||||    
T  28728132 agaaggttgtataaaagttatacaaaaatggttgtacaaatatcatttctc 28728082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 5742683 - 5742728
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||    
T  5742683 gttgtacaaaagttgtaccaaaatggttgtacaaatatcatttctc 5742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 36675374 - 36675333
Alignment:
Q  45 aaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  36675374 aaaagttgtacaaaaatggttgtacaaatatcatttctcaaa 36675333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 37471691 - 37471654
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||| |||||||||||    
T  37471691 aaagttgtacaaaaatgattgtacaaatatcatttctc 37471654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 4148682 - 4148726
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||| || ||||| |||||||||||    
T  4148682 ttgtacaaaagttgtacaaaaatggttatacaaatatcatttctc 4148726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 34578404 - 34578448
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||    
T  34578404 ttgttcaaaagttgtacaaaaatggttgtacaaatatcatttctc 34578448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 20996179 - 20996218
Alignment:
Q  44 caaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  20996179 caaaagttgttcaaaaatgattgtacaaatatcatttctc 20996218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 34838291 - 34838342
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||| ||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  34838291 agaagattgtacaaaagttgtacaaaattggatgtacaaatatcatttctca 34838342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 28156253 - 28156203
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| |||||| |||||| |||||||| |||||||||||    
T  28156253 agaaagttgtacaaaaattgtaccaaaatggttgtacaaatatcatttctc 28156203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 32674253 - 32674303
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||| ||| |||||| |||||||| |||||||||||    
T  32674253 agaaagttgtacaaaagttataccaaaatggttgtacaaatatcatttctc 32674303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 9306029 - 9306066
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  9306029 aaagttgtaccaaaatgattatacaactatcatttctc 9306066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 13884194 - 13884235
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    ||||||||  |||||||||||||||| |||||||||||||||    
T  13884194 aaagttgtcaaaaaatgattgtacaaatatcatttctcaaaa 13884235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 13924059 - 13924022
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  13924059 aaagttgtacaaaaatggttgtacaaatatcatttctc 13924022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 42688468 - 42688427
Alignment:
Q  42 tacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| ||||||||||||||||||| ||||| |||||    
T  42688468 tacaaaagttatacaaaaatgattgtacaaatatcaattctc 42688427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 10591894 - 10591946
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||| |||||||||||||| || ||||||  |||||||| |||||||||||||    
T  10591894 agaaagttgtacaaaagttatataaaaatagttgtacaaatatcatttctcaa 10591946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 37784401 - 37784445
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||| ||| |||||| |||||||| |||||||||||    
T  37784401 ttgtacaaaagttataccaaaatggttgtacaaatatcatttctc 37784445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 48639404 - 48639454
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  48639404 agaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 48639454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 27704485 - 27704435
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  27704485 agaaggttgtacaaaagttgtacaaaaatagttgtacaaatatcatttctc 27704435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 41538532 - 41538482
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  41538532 agaaggttgtacaaaaattgtacaaaaatggttgtacaaatatcatttctc 41538482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 41910206 - 41910252
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatt 79  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||    
T  41910206 agaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatt 41910252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 47945033 - 47944980
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaat-gattgtacaactatcatttctcaa 85  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||||||||||    
T  47945033 agaaggttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctcaa 47944980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 47950463 - 47950410
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaat-gattgtacaactatcatttctcaa 85  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||||||||||    
T  47950463 agaaggttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctcaa 47950410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 11789717 - 11789764
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||    
T  11789717 gttgtacaaaagttgtactaaaatggttgtacaaatatcatttctcaa 11789764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 45335912 - 45335865
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcattt 80  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  45335912 agaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcattt 45335865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 2600560 - 2600606
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||    
T  2600560 gttgtacaaaagttgtactaaaatggttgtacaaatatcatttctca 2600606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 23034337 - 23034383
Alignment:
Q  36 aggttgtacaaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    ||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  23034337 aggttgtacaaaaattgtacaaaaatggttgtacaaatatcatttct 23034383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 30538676 - 30538622
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    |||| |||||||||||||||||| |||||  |||||||| |||||||||||||||    
T  30538676 agaaagttgtacaaaagttgtaccaaaattgttgtacaaatatcatttctcaaaa 30538622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 37848643 - 37848681
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  37848643 aaagttgtacaaaaatgattgtacaaatatcatttctca 37848681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 27383953 - 27384002
Alignment:
Q  42 tacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaagatt 91  Q
    ||||||| |||||| ||| ||||||||||| |||||||||||||||||||    
T  27383953 tacaaaaattgtactaaagtgattgtacaaatatcatttctcaaaagatt 27384002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 1709328 - 1709284
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| |||||||||||||||||||||  |||||||||||    
T  1709328 ttgtacaaaaattgtacaaaaatgattgtacagatatcatttctc 1709284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 640442 - 640395
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcattt 80  Q
    |||| ||||||||||| ||||||||||||| |||||||| ||||||||    
T  640442 agaaagttgtacaaaaattgtacaaaaatggttgtacaaatatcattt 640395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 11070278 - 11070228
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||| ||| |||||| |||||||| |||||||||||    
T  11070278 agaaagttgtacaaaagttatactaaaatggttgtacaaatatcatttctc 11070228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 25272639 - 25272601
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  25272639 aaagttgtacaaaaatggttgtacaaatatcatttctca 25272601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 27866560 - 27866598
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  27866560 aaagttgtacaaaaatggttgtacaaatatcatttctca 27866598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 28548242 - 28548292
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||| |||||  |||||||| |||||||||||    
T  28548242 agaaagttgtacaaaagttgtaccaaaatagttgtacaaatatcatttctc 28548292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 40207830 - 40207872
Alignment:
Q  42 tacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||||||  |||||||| ||||||||||||    
T  40207830 tacaaaagttgtacaaaaatagttgtacaaatatcatttctca 40207872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 48522194 - 48522156
Alignment:
Q  45 aaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  48522194 aaaagttgtacaaaaatggttgtacaaatatcatttctc 48522156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 34349060 - 34349097
Alignment:
Q  45 aaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  34349060 aaaagttgtacaaaaatggttgtacaaatatcatttct 34349097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 42552940 - 42552899
Alignment:
Q  42 tacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||| ||||| |||||||||||||||| |||||||||||    
T  42552940 tacaaaaattgtataaaaatgattgtacaaatatcatttctc 42552899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 35491438 - 35491482
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||| ||||| || ||||| |||||||||||    
T  35491438 ttgtacaaaagttgtacataaatggttatacaaatatcatttctc 35491482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 37969981 - 37969929
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||| |||||||||||||||||  |||||  |||||||| |||||||||||||    
T  37969981 agaaagttgtacaaaagttgtatcaaaatagttgtacaaatatcatttctcaa 37969929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 41458921 - 41458973
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    |||| ||||||||||| |||||| |||||| |||||||| ||| |||||||||    
T  41458921 agaaagttgtacaaaaattgtactaaaatggttgtacaaatattatttctcaa 41458973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 44175595 - 44175539
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaaaga 89  Q
    |||| |||||||||||||| |   ||||||||||||||| ||| |||||||||||||    
T  44175595 agaaagttgtacaaaagttatcacaaaatgattgtacaaatattatttctcaaaaga 44175539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 18729310 - 18729360
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  18729310 agaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 18729360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 39032625 - 39032675
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  39032625 agaaggttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 39032675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 3031884 - 3031834
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  3031884 agaaagttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 3031834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 25585483 - 25585527
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  25585483 ttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 25585527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 12891117 - 12891167
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||| |||||||| |||||||| |||||||||||    
T  12891117 agaatgttgtacaaaagttgtgcaaaaatggttgtacaaatatcatttctc 12891167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 24330003 - 24330053
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  24330003 agaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctc 24330053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 29765880 - 29765830
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||| |||||| |||||||| |||||||||||    
T  29765880 agaaagttgtacaaaagttgtactaaaatggttgtacaaatatcatttctc 29765830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 34693237 - 34693287
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||| |||||||||| || ||||||||||||||||||| |||||||||||    
T  34693237 agaagattgtacaaaaattatacaaaaatgattgtacaaatatcatttctc 34693287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 11432674 - 11432625
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    |||| ||||| ||||| || ||||||||||||||||||||||||||||||    
T  11432674 agaaagttgtccaaaaattatacaaaaatgattgtacaactatcatttct 11432625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 37821146 - 37821195
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    |||||||||||||||||||||| ||||||| |||||| | ||||||||||    
T  37821146 agaaggttgtacaaaagttgtataaaaatggttgtacgaatatcatttct 37821195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 14522991 - 14523035
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||    
T  14522991 ttgtaaaaaagttgtacaaaaatggttgtacaaatatcatttctc 14523035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 30103478 - 30103521
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    |||||||||| || ||||||||||||||||||| ||||||||||    
T  30103478 ttgtacaaaaattatacaaaaatgattgtacaaatatcatttct 30103521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 38387647 - 38387608
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctcaa 85  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  38387647 aaagttgtacaaaaatggttgtacaaatatcatttctcaa 38387608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 8442207 - 8442169
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  8442207 aaagttgtacaaaaataattgtacaaatatcatttctca 8442169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 20985550 - 20985600
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| || |||||||||| |||||||| |||||||||||    
T  20985550 agaaagttgtacaaaaattatacaaaaatggttgtacaaatatcatttctc 20985600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 35578910 - 35578860
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||||||||||||||| ||| || || ||||| |||||    
T  35578910 agaaggttgtacaaaagttgtacaaaaataattatataaatatcacttctc 35578860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 12203195 - 12203158
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  12203195 aaagttgtacaaaaatggttgtacaaatatcatttctc 12203158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 31626102 - 31626147
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||| || ||| ||||||||||||||| |||||||||||    
T  31626102 gttgtacaaaaattataccaaaatgattgtacaaatatcatttctc 31626147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 32732141 - 32732178
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  32732141 aaagttgtacaaaaatgattgtacaaatataatttctc 32732178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 7080578 - 7080546
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcat 78  Q
    |||||||||||||||||||||||||| ||||||    
T  7080578 aaagttgtacaaaaatgattgtacaaatatcat 7080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 14126466 - 14126418
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttc 81  Q
    ||||||||||| |||||||| | |||| ||||||||||| |||||||||    
T  14126466 agaaggttgtataaaagttgcataaaattgattgtacaaatatcatttc 14126418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 31748376 - 31748332
Alignment:
Q  43 acaaaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    |||||||||||| ||||||  |||||||| |||||||||||||||    
T  31748376 acaaaagttgtaaaaaaatagttgtacaaatatcatttctcaaaa 31748332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 50291332 - 50291282
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  50291332 agaaggttgtataaaagttgtacaaaaatgattgtacaaatatcatttctc 50291282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 23133560 - 23133608
Alignment:
Q  35 aaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  23133560 aaggttgtacaaaagttgtacaaaaatggttgtacaaatataatttctc 23133608  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 43307395 - 43307443
Alignment:
Q  38 gttgtacaaaagttgtacaaaaatgattgtacaactatcatttctcaaa 86  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  43307395 gttgtacaaaagttgtacaaaaatggttgtacaaatatcatttcccaaa 43307443  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 6256481 - 6256524
Alignment:
Q  44 caaaagttgtacaaaaatgattgtacaactatcatttctcaaaa 87  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  6256481 caaaagttgtacaaaaatgattgtacaaatattatttctcaaaa 6256524  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 36110184 - 36110134
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||||||||| ||||||||||||  |||||||| |||||||||||    
T  36110184 agaaggttgtacaaaaattgtacaaaaatagttgtacaaatatcatttctc 36110134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 38960681 - 38960730
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttct 82  Q
    ||||||||||| |||| ||||||||||||| |||||||| ||||||||||    
T  38960681 agaaggttgtataaaaattgtacaaaaatggttgtacaaatatcatttct 38960730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 4878017 - 4877982
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgta 68  Q
    |||||||||||||||||||||||||||||| |||||    
T  4878017 agaaggttgtacaaaagttgtacaaaaatggttgta 4877982  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 29577456 - 29577507
Alignment:
Q  32 aagaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||| ||||||||||| ||||||||||||  |||||||| |||||||||||    
T  29577456 aagaaagttgtacaaaaattgtacaaaaatagttgtacaaatatcatttctc 29577507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 1987734 - 1987784
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| |||||| |||||| |||||||| |||||||||||    
T  1987734 agaaagttgtacaaaaattgtactaaaatggttgtacaaatatcatttctc 1987784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 4577607 - 4577557
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| |||||| |||||| |||||||| |||||||||||    
T  4577607 agaaagttgtacaaaaattgtacgaaaatggttgtacaaatatcatttctc 4577557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 7795062 - 7795024
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  7795062 aaagttgtacaaaaatggttgtacaaatatcatttctca 7795024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 15638211 - 15638161
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||| ||||||||||  |||||||||||||||| |||||||||||    
T  15638211 agaaagttgtgcaaaagttgtcaaaaaatgattgtacaaatatcatttctc 15638161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 22893907 - 22893869
Alignment:
Q  45 aaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  22893907 aaaaattgtacaaaaatgattgtacaaatatcatttctc 22893869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 22945575 - 22945537
Alignment:
Q  45 aaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  22945575 aaaaattgtacaaaaatgattgtacaaatatcatttctc 22945537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 24310544 - 24310582
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  24310544 aaagttgtacaaaaatggttgtacaaatatcatttctca 24310582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 26442411 - 26442461
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||| |||||||||||| |||||| |||||||| |||||||||||    
T  26442411 agaaagttgtgcaaaagttgtaccaaaatggttgtacaaatatcatttctc 26442461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 28899238 - 28899276
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  28899238 aaagttgtaccaaaatgattgtacaaatatcatttctca 28899276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 29863601 - 29863551
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||||||||||| ||| |||||| |||||||| |||||||||||    
T  29863601 agaaagttgtacaaaagttataccaaaatggttgtacaaatatcatttctc 29863551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 31318803 - 31318753
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| |||||| |||||| |||||||| |||||||||||    
T  31318803 agaaagttgtacaaaaattgtaccaaaatggttgtacaaatatcatttctc 31318753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 46355314 - 46355364
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| |||||| ||||||||||||||| || |||||||| |||||||||||    
T  46355314 agaatgttgtataaaagttgtacaaaagtggttgtacaaatatcatttctc 46355364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 51107462 - 51107512
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||| ||||| || ||||||||||||||||||| |||||||||||    
T  51107462 agaaagttgtgcaaaaattatacaaaaatgattgtacaaatatcatttctc 51107512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 1868916 - 1868953
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  1868916 aaagttgtacaaaaatggttgtacaaatatcatttctc 1868953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 37731963 - 37731926
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  37731963 aaagttgtaccaaaatgattgtacaaatatcatttctc 37731926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 35037653 - 35037609
Alignment:
Q  39 ttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||  |||||| |||||||| |||||||||||    
T  35037653 ttgtacaaaagttgtatcaaaatggttgtacaaatatcatttctc 35037609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 48704 - 48657
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcattt 80  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  48704 agaaggttgtacaaaaattgtacaaaaatgattgtacaaatatcattt 48657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 145111 - 145061
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||    
T  145111 agaatgttgtacaaaagttgtacaaaaatggttgtacaaatatcatttctc 145061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 1866 - 1917
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctca 84  Q
    ||||| ||||||||||||| |||||||||| |||||||| ||||||||||||    
T  1866 agaagattgtacaaaagttatacaaaaatggttgtacaaatatcatttctca 1917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 4867 - 4917
Alignment:
Q  33 agaaggttgtacaaaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    |||| ||||||||||| |||||| |||||| |||||||| |||||||||||    
T  4867 agaaagttgtacaaaaattgtaccaaaatggttgtacaaatatcatttctc 4917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 17086 - 17049
Alignment:
Q  46 aaagttgtacaaaaatgattgtacaactatcatttctc 83  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  17086 aaagttgtacaaaaatggttgtacaaatatcatttctc 17049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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