View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_49 (Length: 327)
Name: NF1242_high_49
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 38932075 - 38931793
Alignment:
| Q |
30 |
ctaacaattactcctaaatgcaaccaactttgttatatataaatgattcannnnnnnattcatgtcatgtcatgtagagattttatctagctgggaatcc |
129 |
Q |
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| T |
38932075 |
ctaacaattactcctaaatgcaaccaactttgttatatataaatcattcattt-----tttat-tcatgtgatgtagagattttatctagctgggaatcc |
38931982 |
T |
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| Q |
130 |
agtaaaacagagtggtagaaagcgtggtgataaagaagaagaaactaacaacatgttcagtggttttgattcacgtttcttgggacaagttttgaaagtg |
229 |
Q |
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| T |
38931981 |
agtaaaacagagtggaagaaagcgtggtgataaagaagaagaaactaacaacatgttcagtggttttgattcacgtttcttgggacaagttttgaaagtg |
38931882 |
T |
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| Q |
230 |
aaagaaagtataattagaaagcttcaatctccagatgaagaacatagaaagcaccaaattatacatgttaaaggaggtcttagtattat |
318 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38931881 |
aaagaaagtataattagaaagcttcaatctcaagatgaacaacatagaaagcaccaaattatacatgttaaaggaggtcttagtattat |
38931793 |
T |
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