View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_high_52 (Length: 324)

Name: NF1242_high_52
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_high_52
NF1242_high_52
[»] chr1 (24 HSPs)
chr1 (87-317)||(20815803-20816027)
chr1 (159-270)||(20816516-20816627)
chr1 (105-270)||(50191117-50191278)
chr1 (105-270)||(19173125-19173284)
chr1 (106-252)||(39772824-39772966)
chr1 (87-150)||(42023193-42023256)
chr1 (101-149)||(17238478-17238526)
chr1 (103-150)||(39773408-39773455)
chr1 (87-270)||(51309098-51309278)
chr1 (101-236)||(19172642-19172774)
chr1 (87-147)||(17237691-17237752)
chr1 (87-152)||(47966982-47967047)
chr1 (101-149)||(6631317-6631365)
chr1 (101-149)||(6632087-6632135)
chr1 (117-157)||(18610049-18610089)
chr1 (87-126)||(1614940-1614979)
chr1 (104-151)||(16519379-16519426)
chr1 (105-148)||(50278028-50278071)
chr1 (105-148)||(50289696-50289739)
chr1 (106-148)||(29254657-29254699)
chr1 (105-150)||(18121847-18121892)
chr1 (101-150)||(39871838-39871887)
chr1 (106-150)||(4968932-4968976)
chr1 (106-150)||(16518492-16518536)
[»] chr6 (7 HSPs)
chr6 (103-299)||(35073486-35073679)
chr6 (88-315)||(35074134-35074359)
chr6 (120-270)||(17551090-17551236)
chr6 (87-202)||(26666901-26667012)
chr6 (103-150)||(7191650-7191697)
chr6 (87-126)||(29414560-29414599)
chr6 (87-147)||(13220026-13220087)
[»] chr3 (15 HSPs)
chr3 (106-317)||(20384897-20385101)
chr3 (106-233)||(20384237-20384360)
chr3 (111-228)||(8320075-8320188)
chr3 (101-150)||(8322277-8322326)
chr3 (87-149)||(52362626-52362689)
chr3 (101-150)||(37065968-37066017)
chr3 (105-148)||(44908690-44908733)
chr3 (108-151)||(46180808-46180851)
chr3 (104-150)||(23310504-23310550)
chr3 (104-150)||(32982272-32982318)
chr3 (87-150)||(14404681-14404745)
chr3 (105-149)||(16674301-16674345)
chr3 (102-150)||(19192315-19192363)
chr3 (87-150)||(37066608-37066672)
chr3 (103-151)||(54515670-54515718)
[»] chr2 (11 HSPs)
chr2 (103-270)||(16155977-16156140)
chr2 (101-253)||(16156610-16156758)
chr2 (86-149)||(41319994-41320058)
chr2 (104-149)||(13545369-13545414)
chr2 (87-149)||(13544584-13544647)
chr2 (87-150)||(20634204-20634267)
chr2 (87-157)||(34238803-34238874)
chr2 (102-234)||(34239502-34239630)
chr2 (100-150)||(23288916-23288966)
chr2 (105-150)||(7697474-7697519)
chr2 (105-149)||(41320782-41320826)
[»] chr7 (5 HSPs)
chr7 (87-270)||(3689965-3690145)
chr7 (121-243)||(3689332-3689450)
chr7 (103-150)||(36671080-36671127)
chr7 (187-232)||(20343217-20343262)
chr7 (87-150)||(32019329-32019393)
[»] chr4 (9 HSPs)
chr4 (104-270)||(23941662-23941823)
chr4 (101-150)||(47371009-47371058)
chr4 (103-147)||(14014298-14014342)
chr4 (105-148)||(32527551-32527594)
chr4 (104-150)||(6944737-6944783)
chr4 (86-126)||(11311488-11311529)
chr4 (176-253)||(14014360-14014437)
chr4 (103-151)||(1953516-1953564)
chr4 (108-152)||(35133890-35133934)
[»] chr5 (7 HSPs)
chr5 (105-270)||(7209064-7209224)
chr5 (87-157)||(8469804-8469875)
chr5 (105-148)||(25109927-25109970)
chr5 (105-148)||(25169019-25169062)
chr5 (102-150)||(3389257-3389305)
chr5 (87-150)||(41609015-41609079)
chr5 (87-126)||(27100405-27100445)
[»] chr8 (6 HSPs)
chr8 (87-232)||(32319750-32319891)
chr8 (103-156)||(24481356-24481409)
chr8 (105-268)||(32319234-32319395)
chr8 (105-150)||(10296947-10296992)
chr8 (102-150)||(3206470-3206518)
chr8 (87-126)||(42269353-42269393)
[»] scaffold0119 (2 HSPs)
scaffold0119 (87-202)||(3781-3892)
scaffold0119 (87-202)||(15836-15947)
[»] scaffold0008 (1 HSPs)
scaffold0008 (87-128)||(256824-256866)
[»] scaffold0548 (1 HSPs)
scaffold0548 (86-126)||(6873-6914)
[»] scaffold0169 (1 HSPs)
scaffold0169 (102-150)||(476-524)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 87 - 317
Target Start/End: Original strand, 20815803 - 20816027
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttg 186  Q
    ||||||||| ||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||| |||||    
T  20815803 atatatatatatgagggggatattttaactcgaagagtaagtttgttcacttactccaaatcttagtctt----taattgtattttcaattaatggtttg 20815898  T
Q  187 gattgattaataataagtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaacattctatgacttgaatt 286  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20815899 aattgattaataataagtggtatggtaggctataattttcttctctattaaaattaactctcatcaccctaaaatggcaaaacattcaatgacttgaatt 20815998  T
Q  287 gattttttattttattcttttccctttgctt 317  Q
    |||||||  ||||||||||||||||||||||    
T  20815999 gattttt--ttttattcttttccctttgctt 20816027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 20816627 - 20816516
Alignment:
Q  159 tttaattgtattttcaattaatagtttggattgattaataataagtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaa 258  Q
    |||||||||||| ||||||||  |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||| | |||| ||    
T  20816627 tttaattgtattgtcaattaaaggtttagattgattaataataaatggtatggtagactataattttcttctctattcgagttaactctcgttaccccaa 20816528  T
Q  259 aatggcaaaaca 270  Q
    ||||||||||||    
T  20816527 aatggcaaaaca 20816516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 270
Target Start/End: Complemental strand, 50191278 - 50191117
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagt 204  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||| | ||||   |||||||||| | ||||||| | || |||||||||| ||| |||    
T  50191278 gatattttggctccaagagtaagtttgtttacttactccatatctt-gacttt---taattgtattgttaattaatggcttagattgattaaaaattagt 50191183  T
Q  205 ggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
    | ||   || ||| ||| |||||||||||||| | ||||| |||||||||| ||||||| ||||||    
T  50191182 gatacaataagctttaactttcttctctattggagttaacactcatcaccccaaaatggtaaaaca 50191117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 270
Target Start/End: Complemental strand, 19173284 - 19173125
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagt 204  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||     | ||||||| ||||| | ||||| | || ||||| |||| |||||||    
T  19173284 gatattttgactccaagagtaagtttgtttacttactctaaatcttag----ccattaattgaatttt-atttaatggcttagattggttaa-aataagt 19173191  T
Q  205 ggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
    | ||   || ||| |||||||||||||||||  | ||||| ||||||| || ||||||||||||||    
T  19173190 gatacaataagctttaattttcttctctattagagttaacactcatcatcccaaaatggcaaaaca 19173125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 39772824 - 39772966
Alignment:
Q  106 atattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagtg 205  Q
    |||||||||||||||||||||||||||   |||||||||||||||||     |||||||| |||  | |  ||||  ||| |||||||||||||||||||    
T  39772824 atattttgactccaagagtaagtttgtctccttactccaaatcttag----cctttaattctataattagctaatgatttagattgattaataataagtg 39772919  T
Q  206 gtatggtaggctataattttcttctctattgaaattaactctcatca 252  Q
     ||   || ||| |||||||||| ||||||||| ||||| |||||||    
T  39772920 atacaataagctttaattttcttttctattgaagttaacactcatca 39772966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 42023193 - 42023256
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |  | ||||||||||||||||    
T  42023193 atatatatatatgagggggatattttgactccaagagtaagtgtaataacttactccaaatctt 42023256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 17238526 - 17238478
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||    
T  17238526 gagggatattttgactccaagagtaagtttatagacttactccaaatct 17238478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 39773455 - 39773408
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||    
T  39773455 gggatattttgactccaagagtaagtctattaacttactccaaatctt 39773408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 270
Target Start/End: Complemental strand, 51309278 - 51309098
Alignment:
Q  87 atatatatacatgagagg-gatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagttt 185  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||  |||||||  |||| ||||     |||||||| |||  | |  |||| ||||    
T  51309278 atatatatatatgaggggagatattttgactccaagagtaagtttgtctacttactttaaattttag----cctttaattttataattagctaatggttt 51309183  T
Q  186 ggattgattaataataagtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
     ||||||||||||||||||| ||   || ||| ||||||| || ||||||| | ||||| |||||||    ||||||||||||||    
T  51309182 agattgattaataataagtgatacaataagctttaattttattttctattggagttaacactcatcatttcaaaatggcaaaaca 51309098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 19172642 - 19172774
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattga-ttaataa 199  Q
    |||||||||||||||||||||||||||||  || ||||||||  |||||| | |   |||||||| |||| |||||||||   || |||||| || ||||    
T  19172642 gagggatattttgactccaagagtaagttcttttacttactctcaatctt-gac---ctttaattctattatcaattaatgacttagattgatttgataa 19172737  T
Q  200 taagtggtatggtaggctataattttcttctctattg 236  Q
    |||||| || |||||||  | ||||||||||||||||    
T  19172738 taagtgataaggtaggcattcattttcttctctattg 19172774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 17237691 - 17237752
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaat 147  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||| |  |||||||||||||    
T  17237691 atatatatatatgaggagggatattttgactgcaagagtaagtttatagacttactccaaat 17237752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 47966982 - 47967047
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatcttag 152  Q
    ||||||||||| | ||||||||| |||||||||||||||||| | |  | ||||||||||||||||    
T  47966982 atatatatacaggggagggatatattgactccaagagtaagtgtttaaagttactccaaatcttag 47967047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 6631317 - 6631365
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    ||||||||||||||||||||| |||||||| |  |||||||||||||||    
T  6631317 gagggatattttgactccaagggtaagtttatagacttactccaaatct 6631365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 6632135 - 6632087
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    ||||||||||| |||||||||||||||||| |  |||||||||||||||    
T  6632135 gagggatatttagactccaagagtaagtttatagacttactccaaatct 6632087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 18610089 - 18610049
Alignment:
Q  117 ccaagagtaagtttgttcacttactccaaatcttagtcttt 157  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  18610089 ccaagaataagtttgtttacttactccaaatcttagtcttt 18610049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 1614979 - 1614940
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaa 126  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  1614979 atatatatatatgggagggatattttgactccaagagtaa 1614940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 16519426 - 16519379
Alignment:
Q  104 ggatattttgactccaagagtaagtttgttcacttactccaaatctta 151  Q
    ||||||||||||||||||||||||| |  | |||||||||||||||||    
T  16519426 ggatattttgactccaagagtaagtgtaataacttactccaaatctta 16519379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 50278071 - 50278028
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatc 148  Q
    |||||||||||||||||||||||| | || ||||||||||||||    
T  50278071 gatattttgactccaagagtaagtgttttaacttactccaaatc 50278028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 50289739 - 50289696
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatc 148  Q
    |||||||||||||||||||||||| | || ||||||||||||||    
T  50289739 gatattttgactccaagagtaagtgttttaacttactccaaatc 50289696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 29254657 - 29254699
Alignment:
Q  106 atattttgactccaagagtaagtttgttcacttactccaaatc 148  Q
    ||||||| |||||||||||||||||||  ||||||||||||||    
T  29254657 atattttaactccaagagtaagtttgtagacttactccaaatc 29254699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 18121847 - 18121892
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    |||||||||||||||||||||||||||||   |||||||| |||||    
T  18121847 gatattttgactccaagagtaagtttgttatgttactccacatctt 18121892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 39871887 - 39871838
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    |||||||||| ||||||||||||||||||||||   |||||||| |||||    
T  39871887 gagggatattctgactccaagagtaagtttgttatgttactccacatctt 39871838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 4968976 - 4968932
Alignment:
Q  106 atattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||    
T  4968976 atattttgactccaagagtaagtctataaacttactccaaatctt 4968932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 16518492 - 16518536
Alignment:
Q  106 atattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||| |  | ||||||||||||||||    
T  16518492 atattttgactccaagagtaagtgtaataacttactccaaatctt 16518536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 103 - 299
Target Start/End: Original strand, 35073486 - 35073679
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataa 202  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||| |||| ||||||||||||||||    
T  35073486 gggatattttgactccaagagtaaatttgttcacttactccaaatcttagtctt----taattgtattttcaattaatggtttagattgattaataataa 35073581  T
Q  203 gtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaacattctatgac-ttgaattgattttttatttt 299  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  35073582 gttgtatggtaggctataaatttcttctctattgaaattaactctcatcaccctaaaatggcaaaacattcaatgactttgaattgattttttttttt 35073679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 88 - 315
Target Start/End: Complemental strand, 35074359 - 35074134
Alignment:
Q  88 tatatatacatgagagg-gatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttg 186  Q
    |||||||| ||||| || |||||||||| | ||||| |||||||||| ||||||||||||||||  | |||    ||||||||| ||||||||  ||||     
T  35074359 tatatatatatgaggggtgatattttgatttcaagaataagtttgtttacttactccaaatcttgattttt----aattgtattgtcaattaaaggttta 35074264  T
Q  187 gattgattaataataagtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaacattctatgac-ttgaat 285  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| |||| |||||||||||||| |  ||||| ||||||    
T  35074263 gattgattaataataaatggtatggtagactataattttcttctctattggagttaactctcattaccccaaaatggcaaaacaattaatgactttgaat 35074164  T
Q  286 tgattttttattttattcttttccctttgc 315  Q
     |||| ||| ||||||| || || ||||||    
T  35074163 ggattgttttttttattgttctctctttgc 35074134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 120 - 270
Target Start/End: Original strand, 17551090 - 17551236
Alignment:
Q  120 agagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagtggtatggtaggctat 219  Q
    |||||||||||||| || ||||||||||||| |   ||||  ||||||||| ||||||||  |||| |||||||||||||||| ||||||||||| ||||    
T  17551090 agagtaagtttgtttacgtactccaaatcttggc--ttct--aattgtattatcaattaaaggtttagattgattaataataaatggtatggtagactat 17551185  T
Q  220 aattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
    ||||||||||||||||| | ||||||||||  |||| ||||||||||||||    
T  17551186 aattttcttctctattggagttaactctcagtaccccaaaatggcaaaaca 17551236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 26666901 - 26667012
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttg 186  Q
    ||||||||| | | |||||||||||||||||||||||||||||||||   |||||||| ||||| |     |||||||| || | ||||||||| |||      
T  26666901 atatatatataggggagggatattttgactccaagagtaagtttgttatgttactccacatcttgg----cctttaattctaatatcaattaatggttaa 26666996  T
Q  187 gattgattaataataa 202  Q
    ||||||||||||||||    
T  26666997 gattgattaataataa 26667012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 7191697 - 7191650
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||||||  | ||||||| ||||||||    
T  7191697 gggatattttgactccaagagtaagtttaataacttacttcaaatctt 7191650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 29414599 - 29414560
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaa 126  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  29414599 atatatatatatgggagggatattttgactccaagagtaa 29414560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 13220026 - 13220087
Alignment:
Q  87 atatatatacatgagaggg-atattttgactccaagagtaagtttgttcacttactccaaat 147  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||| |  | |||||||||||||    
T  13220026 atatatatatatgaggggggatattttgactccaagagtaagtgtaataacttactccaaat 13220087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 106 - 317
Target Start/End: Complemental strand, 20385101 - 20384897
Alignment:
Q  106 atattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagtg 205  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| | ||||||||||||||||   |||    
T  20385101 atattttgacttcaagagtaagtttgttcacttactccaaatcttagtcttt----aattgtattttcaattaatggcttggattgattaataa---gtg 20385009  T
Q  206 gtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaacattctatgac-ttgaattgattttttattttattct 304  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  20385008 gtatggtagactataattttcttctctattgaaattaactttcatcaccttaaaatggcaaaacattcaatgactttgaattgatttttt-ttttattct 20384910  T
Q  305 tttccctttgctt 317  Q
    |||||||||||||    
T  20384909 tttccctttgctt 20384897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 20384237 - 20384360
Alignment:
Q  106 atattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagtg 205  Q
    ||||||||| ||| | |||||||||||| |||||||||||||||| |  |||    ||||||||| ||||||||  |||| |||||||||||||||| ||    
T  20384237 atattttgattccgaaagtaagtttgtttacttactccaaatcttggatttt----aattgtattgtcaattaaaggtttagattgattaataataaatg 20384332  T
Q  206 gtatggtaggctataattttcttctcta 233  Q
    ||||||||| ||||||||||||||||||    
T  20384333 gtatggtagactataattttcttctcta 20384360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 8320075 - 8320188
Alignment:
Q  111 ttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagtggtatg 210  Q
    |||||||||||| |||||||| | |||||||||||||||||| ||   ||||||| |||| |||||| || | ||||||||| |||||||||||| ||||    
T  8320075 ttgactccaagattaagtttggttacttactccaaatcttag-ct---tttaattttattatcaattgatggcttggattgaataataataagtgatatg 8320170  T
Q  211 gtaggctataattttctt 228  Q
    |||| || ||||||||||    
T  8320171 gtagactttaattttctt 8320188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 8322326 - 8322277
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||||||||| | |||||||| |||||||    
T  8322326 gagggatattttgactccaagagtaagtttggttacttactctaaatctt 8322277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 52362626 - 52362689
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| |  || ||||||||||||    
T  52362626 atatatatatatgaggagggatattttgactccaagagtaagtttatagacctactccaaatct 52362689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 37065968 - 37066017
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    |||||||||||||||||||||||||||| | |  ||||||||||||||||    
T  37065968 gagggatattttgactccaagagtaagtctctaaacttactccaaatctt 37066017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 44908690 - 44908733
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatc 148  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||    
T  44908690 gatattttgactcaaagagtaagtgtgttaacttactccaaatc 44908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 46180851 - 46180808
Alignment:
Q  108 attttgactccaagagtaagtttgttcacttactccaaatctta 151  Q
    ||||||||||||| |||||||||||  |||||||||||||||||    
T  46180851 attttgactccaaaagtaagtttgtatacttactccaaatctta 46180808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 23310504 - 23310550
Alignment:
Q  104 ggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||| | |  ||||||||||||||||    
T  23310504 ggatattttgactccaagagtaagtctatagacttactccaaatctt 23310550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 32982272 - 32982318
Alignment:
Q  104 ggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||| | |  ||||||||||||||||    
T  32982272 ggatattttgactccaagagtaagtctatagacttactccaaatctt 32982318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 14404745 - 14404681
Alignment:
Q  87 atatatatacatgagaggg-atattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||| || |||||| ||||||||||| ||||||||||| |  | ||||||||||||||||    
T  14404745 atatatatatataagaggggatattttgacttcaagagtaagtgtaataacttactccaaatctt 14404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 16674345 - 16674301
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    ||||||||||||| |||||||||||| |  |||||||||||||||    
T  16674345 gatattttgactcaaagagtaagtttatagacttactccaaatct 16674301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 19192363 - 19192315
Alignment:
Q  102 agggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||||| |  |  |||||||||||||||    
T  19192363 agggatattttgactccaagagtaagtgtaatatcttactccaaatctt 19192315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 37066672 - 37066608
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||| ||||| || |||||||||||| ||||||||||| | |  ||||||||||||||||    
T  37066672 atatatatatatgaggagagatattttgacttcaagagtaagtctctaaacttactccaaatctt 37066608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 54515718 - 54515670
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatctta 151  Q
    |||||||||||||||||||||||||| |  |  ||||||||||||||||    
T  54515718 gggatattttgactccaagagtaagtgtaatatcttactccaaatctta 54515670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 16155977 - 16156140
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataa 202  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||     |||| ||| |||| |||||| || | ||||||||| |||||||||    
T  16155977 gggatattttgactccaatagtaagtttggttacttactccaaatcttag----cctttgattttattatcaattgatggcttggattgaataataataa 16156072  T
Q  203 gtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
    ||| |||||||| || |||||||||||| ||||  | ||||| |||||| ||  ||||||| ||||||    
T  16156073 gtgatatggtagactttaattttcttctatattagagttaacactcatcccctcaaaatggtaaaaca 16156140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 16156758 - 16156610
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataat 200  Q
    |||||||||||||||||||||| |||||||| | ||||||| ||||||||||     ||||| || |||| |||||| || | ||||||||| |||||||    
T  16156758 gagggatattttgactccaagaataagtttggttacttacttcaaatcttag----cctttagttctattatcaattgatggcttggattgaataataat 16156663  T
Q  201 aagtggtatggtaggctataattttcttctctattgaaattaactctcatcac 253  Q
    ||||| ||| |||| || |||||||||||| ||||| | ||||  ||||||||    
T  16156662 aagtgatatagtagactttaattttcttctttattggagttaatactcatcac 16156610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 41319994 - 41320058
Alignment:
Q  86 aatatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |  |||||||||||||||    
T  41319994 aatatatatatatgaggagggatattttgactccaagagtaagtttatagacttactccaaatct 41320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 13545414 - 13545369
Alignment:
Q  104 ggatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatct 13545369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 13544584 - 13544647
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||| |  ||||| |||||||||    
T  13544584 atatatatatatgaggagggatattttgacttcaagagtaagtttatagacttattccaaatct 13544647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 20634267 - 20634204
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||| ||| | |||||||||||||||||||||||||| |  |  |||||||||||||||    
T  20634267 atatatatatatgggtgggatattttgactccaagagtaagtgtaatatcttactccaaatctt 20634204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 34238803 - 34238874
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaatcttagtcttt 157  Q
    ||||||||| ||||| || |||||||||||||||| ||||||| | |  |||||||||||||||||| ||||    
T  34238803 atatatatatatgaggagagatattttgactccaaaagtaagtctatagacttactccaaatcttagccttt 34238874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 34239630 - 34239502
Alignment:
Q  102 agggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataata 201  Q
    ||||||||||||||||||||||||||| | |  | |||||||||||||| |    || |||||| || |  |||| ||| |||| | ||||||| |||||    
T  34239630 agggatattttgactccaagagtaagtctatagatttactccaaatcttcg----tcattaattctaatagcaatcaatggtttaggttgattattaata 34239535  T
Q  202 agtggtatggtaggctataattttcttctctat 234  Q
    | || |||||||| || |||||||||| |||||    
T  34239534 attgatatggtagactttaattttcttttctat 34239502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 23288966 - 23288916
Alignment:
Q  100 agagggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    |||||||||||||||||| |||||||||| |  | ||||||||||||||||    
T  23288966 agagggatattttgactctaagagtaagtgtaataacttactccaaatctt 23288916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 7697474 - 7697519
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||| |||||||||| || | ||||||||||||||||    
T  7697474 gatattttgactctaagagtaagtatgataacttactccaaatctt 7697519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 41320826 - 41320782
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatct 149  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  41320826 gatattttgactccaatagtaagtttatagacttactccaaatct 41320782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 270
Target Start/End: Complemental strand, 3690145 - 3689965
Alignment:
Q  87 atatatatacatgagaggg-atattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagttt 185  Q
    ||||||||| ||||| ||| ||||||| |||||||||||||||||| | ||||||||||||||||||     ||||  || |||| |||||| || | ||    
T  3690145 atatatatatatgagtggggatattttaactccaagagtaagtttggttacttactccaaatcttag----cctttggttttattatcaattgatggctt 3690050  T
Q  186 ggattgattaataataagtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
    ||||||| |||||||||||| |||||||| || |||||||||||| ||||  | ||||| |||||| ||  ||||||| ||||||    
T  3690049 ggattgaataataataagtgatatggtagactttaattttcttctatattagagttaacactcatcccctcaaaatggtaaaaca 3689965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 3689332 - 3689450
Alignment:
Q  121 gagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagtggtatggtaggctata 220  Q
    ||||||||||| | |||||||||||||||||  ||||    | || |||| |||||| || | ||||||||| |||||||||||| |||  ||| || ||    
T  3689332 gagtaagtttggttacttactccaaatcttaaccttt----agttctattatcaattgatggcttggattgaataataataagtgatataatagacttta 3689427  T
Q  221 attttcttctctattgaaattaa 243  Q
    |||||||||||||||||| ||||    
T  3689428 attttcttctctattgaagttaa 3689450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 36671127 - 36671080
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    |||||||||||||||||||||||||| |  | ||||||||||||||||    
T  36671127 gggatattttgactccaagagtaagtgtaataacttactccaaatctt 36671080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 20343217 - 20343262
Alignment:
Q  187 gattgattaataataagtggtatggtaggctataattttcttctct 232  Q
    ||||||||||||| || || ||||||||||| ||||||||||||||    
T  20343217 gattgattaataaaaattgatatggtaggctttaattttcttctct 20343262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 32019329 - 32019393
Alignment:
Q  87 atatatatacatgagaggg-atattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||| ||||| ||| ||||||||||||| ||||||||| |  | ||||||||||||||||    
T  32019329 atatatatatatgaggggggatattttgactcctagagtaagtgtaataacttactccaaatctt 32019393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 23941823 - 23941662
Alignment:
Q  104 ggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataag 203  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||     ||||||||| ||||| | ||||| | || ||||| |||| ||||||    
T  23941823 ggatattttgactccaagaataagtttgtttacttactccaaatcttag----cctttaattgaatttt-atttaatggcttagattggttaaaaataag 23941729  T
Q  204 tggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
    || ||   ||  || |||||||||||||||||  | ||||| ||||||| || ||||||||||||||    
T  23941728 tgatacaataaactttaattttcttctctattagagttaacactcatcatcccaaaatggcaaaaca 23941662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 47371058 - 47371009
Alignment:
Q  101 gagggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||||||||||| | ||||| || |||||    
T  47371058 gagggatattttgactccaagagtaagtttgttaagttacttcacatctt 47371009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 14014298 - 14014342
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaat 147  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  14014298 gggatattttgactccaagagtaagtgtgttaacctactccaaat 14014342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 32527594 - 32527551
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatc 148  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||    
T  32527594 gatattttgactctaagagtaagtttgtagacttactccaaatc 32527551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 6944737 - 6944783
Alignment:
Q  104 ggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||| |  | ||||||||||||||||    
T  6944737 ggatattttgactccaagagtaagtgtaataacttactccaaatctt 6944783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 11311529 - 11311488
Alignment:
Q  86 aatatatatacatgag-agggatattttgactccaagagtaa 126  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  11311529 aatatatatatatgaggagggatattttgactccaagagtaa 11311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 14014360 - 14014437
Alignment:
Q  176 ttaatagtttggattgattaataataagtggtatggtaggctataattttcttctctattgaaattaactctcatcac 253  Q
    ||||| |||| |||||||||||||||| || || ||||  || |||||| ||||||||||||| | ||| ||||||||    
T  14014360 ttaatggtttagattgattaataataattgatacggtaaactttaatttccttctctattgaagtcaacactcatcac 14014437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 1953564 - 1953516
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatctta 151  Q
    |||||||||||||||||||||||||| |  |  ||||||||||||||||    
T  1953564 gggatattttgactccaagagtaagtgtaatatcttactccaaatctta 1953516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 35133890 - 35133934
Alignment:
Q  108 attttgactccaagagtaagtttgttcacttactccaaatcttag 152  Q
    |||||||||| || |||||||||||  ||||||||||||||||||    
T  35133890 attttgactctaaaagtaagtttgtctacttactccaaatcttag 35133934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 270
Target Start/End: Original strand, 7209064 - 7209224
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataagt 204  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||| ||||    |||| |||  | |  |||| |||| ||||||||||||||||||    
T  7209064 gatattttgactccaagagtaagtt-gtctacttactccaaatcttagccttt----aattctataattagctaatggtttagattgattaataataagt 7209158  T
Q  205 ggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaaca 270  Q
    | ||   || ||| |||||||||| ||||||| | ||||| ||||||| |  ||||||||||||||    
T  7209159 gatacaataagctttaattttcttttctattggagttaacactcatcatctcaaaatggcaaaaca 7209224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 8469875 - 8469804
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaatcttagtcttt 157  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||| |  |||||||| ||||||||| ||||    
T  8469875 atatatatatatgaggagggatattttgactccaagagtaaatttatagacttactctaaatcttagccttt 8469804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 25109970 - 25109927
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatc 148  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  25109970 gatattttgactccaagagtaagtgtgttaacttactccaaatc 25109927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 25169062 - 25169019
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatc 148  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  25169062 gatattttgactccaagagtaagtgtgttaacttactccaaatc 25169019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 3389257 - 3389305
Alignment:
Q  102 agggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||||| || |  |||||||||||||||    
T  3389257 agggatattttgactccaagagtaagtgtgatatcttactccaaatctt 3389305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 41609079 - 41609015
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||| | |  ||||||||||||||||    
T  41609079 atatatatatatgaggagggatattttgacttcaagagtaagtctctaaacttactccaaatctt 41609015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 27100445 - 27100405
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaa 126  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  27100445 atatatatatatgaggagggatattttgactccaagagtaa 27100405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 32319891 - 32319750
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttg 186  Q
    ||||||||| || |||| |||||||||||||||||||||||| | || ||||||||||||| || | |   |||||| | || | ||||||||| ||||     
T  32319891 atatatatatataagagagatattttgactccaagagtaagtctattaacttactccaaat-tttgac---ctttaactctaatatcaattaatggttta 32319796  T
Q  187 gattgattaataataagtggtatggtaggctataattttcttctct 232  Q
    |||||||| ||||||| || |||| ||| || ||||||| ||||||    
T  32319795 gattgattcataataattgatatgatagactttaattttgttctct 32319750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 24481409 - 24481356
Alignment:
Q  103 gggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctt 156  Q
    |||||||||| || |||| ||||||||||||  |||||||||||||||||||||    
T  24481409 gggatattttcacaccaaaagtaagtttgtttccttactccaaatcttagtctt 24481356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 268
Target Start/End: Original strand, 32319234 - 32319395
Alignment:
Q  105 gatattttgactccaagagtaagttt--gttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttggattgattaataataa 202  Q
    |||||||||||||||||| |||||||  ||  |||||||||| ||||||| ||||    |||| |||  | |  |||| |||| ||||||||||||||||    
T  32319234 gatattttgactccaagaataagtttttgtctacttactccatatcttagccttt----aattctataattagctaatggtttagattgattaataataa 32319329  T
Q  203 gtggtatggtaggctataattttcttctctattgaaattaactctcatcaccctaaaatggcaaaa 268  Q
    ||| ||  |||  || |||||||||| ||||||| | ||||| ||||||| |  ||||||||||||    
T  32319330 gtgatacagtaaactttaattttcttttctattggagttaacactcatcatctcaaaatggcaaaa 32319395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 10296992 - 10296947
Alignment:
Q  105 gatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    |||||||||||||||||||||||| |  | ||||||||||||||||    
T  10296992 gatattttgactccaagagtaagtgtaataacttactccaaatctt 10296947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 3206470 - 3206518
Alignment:
Q  102 agggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||||| |  |  |||||||||||||||    
T  3206470 agggatattttgactccaagagtaagtgtaatatcttactccaaatctt 3206518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 42269353 - 42269393
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaa 126  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  42269353 atatatatatatgaggagggatattttgactccaagagtaa 42269393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 3892 - 3781
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttg 186  Q
    ||||||||| | | |||||||||||||||||||||||||||||||||   |||||||| ||||| |     |||||||| || | ||||||||| |||      
T  3892 atatatatataggggagggatattttgactccaagagtaagtttgttatgttactccacatcttgg----cctttaattctaatatcaattaatggttaa 3797  T
Q  187 gattgattaataataa 202  Q
    ||||||||||||||||    
T  3796 gattgattaataataa 3781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 15947 - 15836
Alignment:
Q  87 atatatatacatgagagggatattttgactccaagagtaagtttgttcacttactccaaatcttagtctttctttaattgtattttcaattaatagtttg 186  Q
    ||||||||| | | |||||||||||||||||||||||||||||||||   |||||||| ||||| |     |||||||| || | ||||||||| |||      
T  15947 atatatatataggggagggatattttgactccaagagtaagtttgttatgttactccacatcttgg----cctttaattctaatatcaattaatggttaa 15852  T
Q  187 gattgattaataataa 202  Q
    ||||||||||||||||    
T  15851 gattgattaataataa 15836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 256824 - 256866
Alignment:
Q  87 atatatatacatgag-agggatattttgactccaagagtaagt 128  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  256824 atatatatatatgaggagggatattttgactccaagagtaagt 256866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 6873 - 6914
Alignment:
Q  86 aatatatatacatgag-agggatattttgactccaagagtaa 126  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  6873 aatatatatatatgaggagggatattttgactccaagagtaa 6914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 476 - 524
Alignment:
Q  102 agggatattttgactccaagagtaagtttgttcacttactccaaatctt 150  Q
    ||||||||||||||||||||||||||| |  |  |||||||||||||||    
T  476 agggatattttgactccaagagtaagtgtaatatcttactccaaatctt 524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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