View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_60 (Length: 309)
Name: NF1242_high_60
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 7204834 - 7205100
Alignment:
| Q |
14 |
agaacaaagttaaatcttcaatggcatgtagtgaaactggtagcatgaatagaagtatcagtacacaaattcttactataggatcacttcactatcttca |
113 |
Q |
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| T |
7204834 |
agaacaaagttaaatcttcaatggcatgtagtgaaactggtagcatgaatagaagtatcagtacacaaattcttactataggatcacttcactatcttca |
7204933 |
T |
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| Q |
114 |
ccaggggcttgtccagtgctagaaccatcgtagttccacttaggaagctcagagggatgctcaacaggctttgatatggtctgagaataaaataaattca |
213 |
Q |
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| T |
7204934 |
ccaggggcttgtccagtgctagaaccatcgtagttccacttaggaagctcagagggatgctcaacaggctttgatatggtctgagaataaaataaattca |
7205033 |
T |
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| Q |
214 |
tataggattataatgatagcatgagataaatagatcaaacaataacatggcgtaaatattttatatt |
280 |
Q |
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| T |
7205034 |
tataggattataatgatagcatgagataaatagatcaaacaataacatggcgtaaatattttatatt |
7205100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 7193524 - 7193679
Alignment:
| Q |
47 |
aaactggtagcatgaatagaagtatcagtacacaaattcttactataggatcacttcactatcttcaccaggggcttgtccagtgctagaaccatcgtag |
146 |
Q |
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| T |
7193524 |
aaactagtaacatgaatagaagtatcggtaaacaaattcttactataggatcacttcagtatcttcaccaggggcttgtccagtgctagatccatcatag |
7193623 |
T |
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| Q |
147 |
ttccacttaggaagctcagagggatgctcaacaggctttgatatggtctgagaata |
202 |
Q |
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| T |
7193624 |
ttccacttaggaagctcagacggatgctcaacaggctttgatatggtctgagaata |
7193679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 33278422 - 33278489
Alignment:
| Q |
95 |
gatcacttcactatcttcaccaggggcttgtccagtgctagaaccatcgtagttccacttaggaagct |
162 |
Q |
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| T |
33278422 |
gatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttgggaagct |
33278489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 29443326 - 29443389
Alignment:
| Q |
99 |
acttcactatcttcaccaggggcttgtccagtgctagaaccatcgtagttccacttaggaagct |
162 |
Q |
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| T |
29443326 |
acttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagct |
29443389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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