View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_65 (Length: 297)
Name: NF1242_high_65
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 26576774 - 26577003
Alignment:
| Q |
29 |
atacttttatttcatcgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaat |
128 |
Q |
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| T |
26576774 |
atacttttatttcaacgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaat |
26576873 |
T |
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| Q |
129 |
ggcattgcagaattataaatgaactgcaataaataaagataacatgatttaaaaccatgtcgccttttgtggaaggggaggtgtgtctagcttgttgtag |
228 |
Q |
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| T |
26576874 |
ggcattgcagaattataaatgaactgcaataaataaagatgacatggttt-------------------tggaaggggaggtgtgtctagcttgtggtag |
26576954 |
T |
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| Q |
229 |
tttttgagttgtatctctatgctttagaaaatttgtatttgtttttagt |
277 |
Q |
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| T |
26576955 |
tttttgagttgtatctctatgctttagaaaatttgtatttgtttttagt |
26577003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 26584679 - 26584826
Alignment:
| Q |
29 |
atacttttatttcatcgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaat |
128 |
Q |
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| T |
26584679 |
atacttttatttcaatgagttgatatttatattacttcattgcacatttctatttttctctctaacattaaaatttccatgtcaggcttagaataaaagt |
26584778 |
T |
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| Q |
129 |
ggcattgcagaattataaatgaactgcaataaataaagataacatgat |
176 |
Q |
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| T |
26584779 |
gtcattgcagaattataaatgaactgcaataaataaagataacgtgat |
26584826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 26571255 - 26571343
Alignment:
| Q |
82 |
ttttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaataaataaagataa |
170 |
Q |
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| T |
26571255 |
ttttctctttaacattcaaatttcttggacaggtcgagaataaaaatatcattgcagaattataaatgaactgcaataaataatgataa |
26571343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 26584856 - 26584901
Alignment:
| Q |
230 |
ttttgagttgtatctctatgctttagaaaatttgtatttgttttta |
275 |
Q |
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| T |
26584856 |
ttttgagttgtatctcactgctttagcaaatttgtatttgttttta |
26584901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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