View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_74 (Length: 286)
Name: NF1242_high_74
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_74 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 28468664 - 28468859
Alignment:
| Q |
33 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnnc |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28468664 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgttttt----- |
28468758 |
T |
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| Q |
133 |
ttctttagttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
232 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28468759 |
ttctttggttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
28468858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 34735070 - 34734875
Alignment:
| Q |
33 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnnc |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34735070 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgttttt----- |
34734976 |
T |
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| Q |
133 |
ttctttagttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
232 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34734975 |
ttctttggttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
34734876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 76376 - 76180
Alignment:
| Q |
33 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnnc |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
76376 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgtttttt---- |
76281 |
T |
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| Q |
133 |
ttctttagttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
232 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76280 |
ttctttggttgtaattctttgtgcagcatgattcattgaaatgtacggccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
76181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 29318959 - 29318764
Alignment:
| Q |
33 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnnc |
132 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29318959 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgttttt----- |
29318865 |
T |
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| Q |
133 |
ttctttagttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
232 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29318864 |
ttctttggttgtaattctttgtgcaacatgattcattgaaatgtacagccatttaaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
29318765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 24967055 - 24966859
Alignment:
| Q |
33 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgttgnnnnnnnnnc |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24967055 |
catagggtctgaatggagtgactgcacttgcatgtgtatacttcatttgagagtcatgatcacaatctttactcagctcaattgttgctgtttttt---- |
24966960 |
T |
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| Q |
133 |
ttctttagttgtaattctttgtgcagcatgattcattgaaatgtacagccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
232 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966959 |
ttctttggttgtaattctttgtgcagcatgattcattgaaatgtacggccatttgaaattcagtttatctttcattgtatgaagtggattcaagcaatat |
24966860 |
T |
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