View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_83 (Length: 270)
Name: NF1242_high_83
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_83 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 12875755 - 12875567
Alignment:
| Q |
35 |
atcaaatcacatcatacttctactttgtatgttaatttttaaaatatctttacaaatatctacatcggttggttttctaatatattgtcgagaatcatgg |
134 |
Q |
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| T |
12875755 |
atcaaatcacatcatacttctactttgtatgttaatttttaaaatatctttacaaatatctacatcggttggttttctaatatattgtcgagaatcatgg |
12875656 |
T |
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| Q |
135 |
tagagccaaagaaaaataaattgagagaaatattgattatctgaaactcataaaatgataaaagattattccaatcagcgtaagatact |
223 |
Q |
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| T |
12875655 |
tagagccaaagaaaaataaattgagagaaatattgattatctgaaactcatcaaatgataaaagattattccaatcagcgtaagatact |
12875567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 45518840 - 45518876
Alignment:
| Q |
144 |
agaaaaataaattgagagaaatattgattatctgaaa |
180 |
Q |
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| T |
45518840 |
agaaaaataaattgagagaaagattgattatttgaaa |
45518876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 10431128 - 10431090
Alignment:
| Q |
142 |
aaagaaaaataaattgagagaaatattgattatctgaaa |
180 |
Q |
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| T |
10431128 |
aaagaaaaataaattgagagaaagattgattatttgaaa |
10431090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 31795776 - 31795809
Alignment:
| Q |
66 |
ttaatttttaaaatatctttacaaatatctacat |
99 |
Q |
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| T |
31795776 |
ttaatttataaaatatctttacaaatatctacat |
31795809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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