View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_84 (Length: 269)
Name: NF1242_high_84
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 41078186 - 41077957
Alignment:
| Q |
31 |
gttcaaagtaaccaatgtcgtacatcaaatcctatacaaaaatcaatattacaatcaaacttttctaagcataaactaataggataaagtcctagcttaa |
130 |
Q |
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| T |
41078186 |
gttcaaagtaaccaatgtcgtacatcaaatcctatacaaaaatcaatattacaatcaaacttttctaagca-aaactaataggataaagtcctagcttaa |
41078088 |
T |
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| Q |
131 |
tgaatctctaagaaaatac-----acataagttcnnnnnnnntagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaa |
225 |
Q |
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| T |
41078087 |
tgaatctctaagaaaatacacataacataagttc-aaaaaaatagaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaa |
41077989 |
T |
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| Q |
226 |
gcatagcataatacaatataggcacacatctc |
257 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41077988 |
gcatagcataatacaatataggcacacatctc |
41077957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 1217228 - 1217181
Alignment:
| Q |
210 |
catagaatcaattaaagcatagcataatacaatataggcacacatctc |
257 |
Q |
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||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
1217228 |
catagaatcaattaaagcatagcataataaaattcaagcacacatctc |
1217181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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