View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_93 (Length: 259)
Name: NF1242_high_93
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_93 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 24360808 - 24360989
Alignment:
| Q |
50 |
cgccacttttgatcaaaaagtaacaaaataagagatttggaggtttcttagtctctttatcgatgtacacacgcacacacgtagatacataatgttatcg |
149 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24360808 |
cgccacttttgatcaaaaagtaacaaaagaagagatttggaggtttcttagtctctttatcgatgtacacacgcacacacgtagatacataatgttatcc |
24360907 |
T |
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| Q |
150 |
ttggtactattagtcagtttgaacatatatctgttacttaactataagtctataaccacaaagatataaagggttcactact |
231 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24360908 |
ttggtactattagtcaatttgaacatatatctgttacttaactataagtctataaccacaaagatataaagggttcactact |
24360989 |
T |
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