View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1242_high_96 (Length: 258)
Name: NF1242_high_96
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_96 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 36153084 - 36153279
Alignment:
| Q |
50 |
aggagggtcttttggtattgggaggtggacccggcagaccctcgaagtgctgccactgttctataatcaaagagaattcttccccattttccagcattaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36153084 |
aggagggtcttttggtattgggaggtgggcacggcagaccctcgaagtgcttccactgttctataatcaaagagaattcttccccattttccagcattaa |
36153183 |
T |
|
| Q |
150 |
tataccagtttctatcagtataagggtataaagaaagacaaattatactttcaagcttattctcttcccaccatcaggtattataagtattatcta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
36153184 |
tataccagtttctatcagtataagggtataaagaaagacaaattatactttcaagcttattctcttcccaccgttaggtattataattattatcta |
36153279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 36158216 - 36158262
Alignment:
| Q |
167 |
gtataagggtataaagaaagacaaattatactttcaagcttattctc |
213 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36158216 |
gtataaggatataaagaaaaacaaattatactttcaagcttattctc |
36158262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University