View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_high_99 (Length: 256)
Name: NF1242_high_99
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_high_99 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 50558296 - 50558120
Alignment:
| Q |
67 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcattttttgaccactgtaacaggtttgtgaaaaaagtcctcgtcttcgt |
166 |
Q |
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| T |
50558296 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcgttttttgaccactgtaacaggtttgtgaaaaaagtcctcgtcttcgt |
50558197 |
T |
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| Q |
167 |
gatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacgagatgtctgtggt |
243 |
Q |
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| T |
50558196 |
gatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacgagatgtctgtggt |
50558120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 50568381 - 50568275
Alignment:
| Q |
131 |
ctgtaacaggtttgtgaaaaaagtcctcgtcttcgtgatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacg |
230 |
Q |
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| T |
50568381 |
ctgtaacaggtttgtaaaaacagtccttttcttggtgatacagaccacttatttcttgagcttcctgtattgaaagataaattggagaaatacatcaaca |
50568282 |
T |
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| Q |
231 |
agatgtc |
237 |
Q |
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| T |
50568281 |
agatgtc |
50568275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 29770548 - 29770436
Alignment:
| Q |
132 |
tgtaacaggtttgtgaaaaaagtcctcgtcttcgtgatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacga |
231 |
Q |
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| T |
29770548 |
tgtaacaggtttgtcgaaatagtcctcgtatttgtgatacggaccacttatttcttgagctccctcttttggaagataagttgcaaaaatacatcaatga |
29770449 |
T |
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| Q |
232 |
gatgtctgtggtg |
244 |
Q |
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| T |
29770448 |
gatgtctgtggtg |
29770436 |
T |
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