View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_10 (Length: 615)

Name: NF1242_low_10
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_10
NF1242_low_10
[»] chr8 (4 HSPs)
chr8 (11-587)||(9677611-9678189)
chr8 (16-249)||(9693357-9693590)
chr8 (141-186)||(30652024-30652069)
chr8 (295-323)||(9693594-9693622)
[»] chr4 (5 HSPs)
chr4 (20-234)||(35160435-35160649)
chr4 (22-234)||(35154044-35154256)
chr4 (23-188)||(15555032-15555197)
chr4 (22-149)||(37147414-37147541)
chr4 (141-186)||(16298996-16299041)
[»] chr3 (12 HSPs)
chr3 (30-191)||(46469649-46469810)
chr3 (36-191)||(5155227-5155382)
chr3 (29-188)||(46478252-46478411)
chr3 (16-116)||(47398294-47398394)
chr3 (18-209)||(4582480-4582671)
chr3 (31-189)||(16023908-16024066)
chr3 (16-105)||(47414938-47415027)
chr3 (118-207)||(51942045-51942134)
chr3 (29-113)||(46507113-46507197)
chr3 (24-134)||(46490048-46490158)
chr3 (24-131)||(46497368-46497475)
chr3 (34-134)||(45900912-45901012)
[»] chr6 (1 HSPs)
chr6 (35-186)||(16967863-16968014)
[»] chr2 (4 HSPs)
chr2 (17-169)||(20143500-20143652)
chr2 (63-191)||(20154383-20154511)
chr2 (17-169)||(20169858-20170010)
chr2 (141-186)||(39548117-39548162)
[»] chr1 (1 HSPs)
chr1 (141-186)||(33097480-33097525)


Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Original strand, 9677611 - 9678189
Alignment:
Q  11 cagagaggagatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9677611 cagaaaggagatgagagacgaaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagc 9677710  T
Q  111 gatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9677711 gatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcgaccgtgagggaaactttc 9677810  T
Q  211 gcattgttggtgcttgattgatcaaggtgagccattgtttgttgnnnnnnnnnnnnnnnnngcgaaccattgtttgttaatttccttcttttgatttttc 310  Q
    |||| ||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||| |    
T  9677811 gcatggttggtgcttgattgatcaaggtgagccattgtttgtt--ttttttgtttttttttgcgaaccattgtttgttaatttccttcttttgattttcc 9677908  T
Q  311 aactgtaccagaaaagcaatcacagggagagaaacacttcgatgaggaacacaacaatgcagtaattgaaatttaacagaacgcataaatgaaa------ 404  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||          
T  9677909 aactgtaccagaaaag-aatcacagggagagaaacacttccatgaggaacacaacaatgcagtaattgaaatttaacagaacgcataagtgaaaactttc 9678007  T
Q  405 acgagtaaaccactaaactttaactaattgctagacgttgtaaggacactctcaaataagttcttgagattatgaatatatggaattagtttctgactcg 504  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9678008 acgagtaaaccactaaactttaactaatcgctagacgctgtaaggacactctcaaataagttcttgagattatgaatatatcgaattagtttctgactcg 9678107  T
Q  505 gtcaaattttactcatatcagtcattcttaaaacatgacatgggatcaattgatgataaacggttaaatttaaggacgaagct 587  Q
    |||||||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||    
T  9678108 gtcaaattttactcatgt-agtcattcttaaaacacggcatgggatcaattgatgataaacggttaaatttaaggaccaagct 9678189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 9693357 - 9693590
Alignment:
Q  16 aggagatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatga 115  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  9693357 aggagatgagagacaaagaagttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatga 9693456  T
Q  116 tactgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcatt 215  Q
    | |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |  |||||||||| |||||| |     
T  9693457 tgctgagaacaacttggagagacaatggtgaaaagacgacattcttgtctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttg 9693556  T
Q  216 gttggtgcttgattgatcaaggtgagccattgtt 249  Q
    |||||||||||||| |||||||||||||||||||    
T  9693557 gttggtgcttgattcatcaaggtgagccattgtt 9693590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 30652069 - 30652024
Alignment:
Q  141 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 186  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  30652069 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 30652024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 9693594 - 9693622
Alignment:
Q  295 cttcttttgatttttcaactgtaccagaa 323  Q
    |||||||||||||||||||||||||||||    
T  9693594 cttcttttgatttttcaactgtaccagaa 9693622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 35160649 - 35160435
Alignment:
Q  20 gatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatact 119  Q
    ||||||||||  ||||||||||||||||  |||||||||| ||||||||||| |||||||||||||| || | ||||||||||||| ||| ||| || ||    
T  35160649 gatgagagactgaggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgct 35160550  T
Q  120 gagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttg 219  Q
    ||| |||||||||||||||||||| ||||| |||| ||| || ||||||||||| ||||||||||||||| | |  ||||| ||||||||||  | ||||    
T  35160549 gagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggttg 35160450  T
Q  220 gtgcttgattgatca 234  Q
     ||||||||| ||||    
T  35160449 ttgcttgattcatca 35160435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 35154256 - 35154044
Alignment:
Q  22 tgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactga 121  Q
    ||||||||||||||||||||||||| |  |||||||||  ||||||||| ||||||||||||| | || | ||| ||||||||| ||||||||||    |    
T  35154256 tgagagacgaaggagttgagatgataggcggatttgaattggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaa 35154157  T
Q  122 gaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaactttcgcattgttggt 221  Q
    | || |||||||||||||| || ||||| ||||  || || |||||||| |||||||| ||||||||||| |  |||||||||||||||| || ||||      
T  35154156 gcactacttggagagacaaaggcgaaaacacgatattcttttctgattcctttgagaaaagatgtttggcgatagtgagggaaactttcgtatggttgca 35154057  T
Q  222 gcttgattgatca 234  Q
    |||||||| ||||    
T  35154056 gcttgattcatca 35154044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 15555197 - 15555032
Alignment:
Q  23 gagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgag 122  Q
    |||||| || ||||||||| |||| ||||||||| || ||||||||||||||||| ||||| || || | ||||||||||||| |||||||||| |||||    
T  15555197 gagagatgacggagttgagttgatggatggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag 15555098  T
Q  123 aacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgttt 188  Q
    || |||||| |  || |  |||||||| || | ||||||||  | || ||| ||||||||||||||    
T  15555097 aataacttgaatcgagagaggtgaaaacacaatgttgttgttgggttgtttagagaagagatgttt 15555032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 37147541 - 37147414
Alignment:
Q  22 tgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactga 121  Q
    ||||| |||||  |||||| ||||| ||||||||| ||   ||||||||||||||  |||||||| || |||||||  |||||| ||||||| ||||| |    
T  37147541 tgagaaacgaataagttgacatgattgatggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggacccttggagccagcagcgataatactta 37147442  T
Q  122 gaacaacttggagagacaatggtgaaaa 149  Q
    ||||||||||||| ||||| || |||||    
T  37147441 gaacaacttggagcgacaagggcgaaaa 37147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 16299041 - 16298996
Alignment:
Q  141 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 186  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  16299041 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 16298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 46469810 - 46469649
Alignment:
Q  30 gaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaact 129  Q
    ||||||||||||||| |||||||||||| | |||||||| |||||||| |||||||| ||| ||||||||||| || ||||||  ||  |||| | ||||    
T  46469810 gaaggagttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataact 46469711  T
Q  130 tggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggc 191  Q
    ||||| ||||  || ||||| || ||||| ||||||||||||||||||||||||||||||||    
T  46469710 tggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggc 46469649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 5155382 - 5155227
Alignment:
Q  36 gttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggaga 135  Q
    ||||||||| ||  |||||||| || ||||||||||||||||||||||||| || ||||||||||||||| |||||||||| || || |||||||| |||    
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 5155283  T
Q  136 gacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggc 191  Q
    |||| ||| ||||| || | ||| |||||| |||||||  |||| |||||||||||    
T  5155282 gacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggc 5155227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 46478411 - 46478252
Alignment:
Q  29 cgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaac 128  Q
    ||||| |||||||||||||| |||||||| |  | ||||||| || ||| ||||||||||| ||||||||||| |||  |||||| ||||| || |||||    
T  46478411 cgaagtagttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaac 46478312  T
Q  129 ttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgttt 188  Q
    |||||| || | ||| ||||| |||| |||||||||||||||||| ||||||||||||||    
T  46478311 ttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttt 46478252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 47398294 - 47398394
Alignment:
Q  16 aggagatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatga 115  Q
    |||||||||||| |||||||||||||||| ||  |||| ||| |||  |||||||||||||||| |||||| || ||||||||||||||| ||||| |||    
T  47398294 aggagatgagaggcgaaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttga 47398393  T
Q  116 t 116  Q
    |    
T  47398394 t 47398394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 4582480 - 4582671
Alignment:
Q  18 gagatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgata 117  Q
    |||||||||  | |||||||||||||||||  | |||||| |  | ||||||||||||||||||| |   || || || ||||||||| ||||||| ||     
T  4582480 gagatgagaagcaaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatg 4582579  T
Q  118 ctgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaacttt 209  Q
    |||||  |||||||||| || | ||| ||||| || | ||| || |||||||||||||||||||||| |||||| |   |||||||||||||    
T  4582580 ctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttt 4582671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 16024066 - 16023908
Alignment:
Q  31 aaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaactt 130  Q
    ||||||||||||| || | | |||| | | |||||||||| ||||||||||||||| || || ||||| || ||| ||||||| |  |||||||||||||    
T  16024066 aaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaactt 16023967  T
Q  131 ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttg 189  Q
    | || || |  || ||||| | || ||| |||||||||| |||||| ||||||||||||    
T  16023966 gaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttg 16023908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 47414938 - 47415027
Alignment:
Q  16 aggagatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagcca 105  Q
    |||||||||||| | ||||||||||||||||| ||||||||  | | ||||||||||||||||| ||| || || | |||||||||||||    
T  47414938 aggagatgagaggcaaaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagcca 47415027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 51942134 - 51942045
Alignment:
Q  118 ctgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggctaccgtgagggaaact 207  Q
    ||||| |||||||| ||||||||||| |||||||||| |||||| ||||||| ||||||||| | ||||||||| |   |||||||||||    
T  51942134 ctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 51942045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 46507113 - 46507197
Alignment:
Q  29 cgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgat 113  Q
    |||| ||||||||||||| ||| |||||| | | ||||||||| |||| |||||||||||| ||||||||||||||  |||||||    
T  46507113 cgaatgagttgagatgatggatagatttggagcagaggaagtcaagaatctgttgttgagtgggaccctcagagccggcagcgat 46507197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 46490158 - 46490048
Alignment:
Q  24 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 123  Q
    |||| |||| |||||||| |||||| |||| ||  |  |||||||||| |||||||||||||| || |  || ||||||||| |||||||||| |||||     
T  46490158 agaggcgaatgagttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagt 46490059  T
Q  124 acaacttggag 134  Q
    |||||||||||    
T  46490058 acaacttggag 46490048  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 46497475 - 46497368
Alignment:
Q  24 agagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgaga 123  Q
    |||| ||||||||||||| |||| | |||||||| |  ||||||||| |||||| |||||||| || || ||||| ||||||  ||||||||| || ||     
T  46497475 agaggcgaaggagttgagttgataggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgatgatgcttagc 46497376  T
Q  124 acaacttg 131  Q
    ||||||||    
T  46497375 acaacttg 46497368  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 45901012 - 45900912
Alignment:
Q  34 gagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttgga 133  Q
    ||||||||||| ||| ||||||  ||  ||||||||| || |||||| ||||| || ||||||||||  ||| |||| ||||| ||||||| ||||||||    
T  45901012 gagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgagaataacttgga 45900913  T
Q  134 g 134  Q
    |    
T  45900912 g 45900912  T

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Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 16967863 - 16968014
Alignment:
Q  35 agttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggag 134  Q
    ||||||||||||||||||||||| |  ||||||| | || ||| ||||||||||| ||||||||||| |||| |||||| || || |  |||||||||||    
T  16967863 agttgagatgatcgatggatttggattggaggaatttgaaaagttgttgttgagtgggaccctcagaaccaaaagcgattatgcttaacacaacttggag 16967962  T
Q  135 agacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 186  Q
     || | ||||||||| |||| ||||||||| |||||||| ||||| ||||||    
T  16967963 tgagagtggtgaaaacacgatgttgttgtccgattctttggagaatagatgt 16968014  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 20143652 - 20143500
Alignment:
Q  17 ggagatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgat 116  Q
    |||||| ||||  ||||||||| ||||||| | |||||||||| ||||||||||||| ||| |||||||| || ||| | ||||| ||| ||||||| |     
T  20143652 ggagataagaggtgaaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataag 20143553  T
Q  117 actgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgatt 169  Q
     ||||| |||| |||||| || | ||| ||||| |||| ||| ||||||||||    
T  20143552 gctgagcacaatttggagtgatagtggcgaaaacacgatgttcttgtctgatt 20143500  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 20154511 - 20154383
Alignment:
Q  63 gaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgttg 162  Q
    ||||||||||| |||||||||||| || ||||| ||||||||| ||||| |||  ||||  ||||||||||| |||| ||| ||||| || | ||| |||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttg 20154412  T
Q  163 tctgattcttttgagaagagatgtttggc 191  Q
    ||||||| |||  |||| |||||||||||    
T  20154411 tctgattgtttcaagaacagatgtttggc 20154383  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 20169858 - 20170010
Alignment:
Q  17 ggagatgagagacgaaggagttgagatgatcgatggatttgaaccggaggaagtcgagaagctgttgttgagtaggaccctcagagccaacagcgatgat 116  Q
    |||||| |||| ||||||| |||||||||| | |||||||||| ||||||||||||| ||| |||||||  || ||||| ||||| |||  ||| || |     
T  20169858 ggagataagaggcgaaggaattgagatgattggtggatttgaaacggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataag 20169957  T
Q  117 actgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgatt 169  Q
     ||||| |||| ||| || || | ||||||||| |||||||| ||||||||||    
T  20169958 gctgagcacaatttgaagtgatagtggtgaaaacacgacgtttttgtctgatt 20170010  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 39548162 - 39548117
Alignment:
Q  141 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 186  Q
    ||||||||| | || |||||||||||||||||| ||||||||||||    
T  39548162 tggtgaaaacatgatgttgttgtctgattctttggagaagagatgt 39548117  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 33097525 - 33097480
Alignment:
Q  141 tggtgaaaagacgacgttgttgtctgattcttttgagaagagatgt 186  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||||    
T  33097525 tggtgaaaacacgatgttgttgtctgattctttggagaagagatgt 33097480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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