View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_100 (Length: 284)
Name: NF1242_low_100
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39988384 - 39988162
Alignment:
| Q |
1 |
ggcctccatacactggcccacaccaccggcttatccttccacgacaagaatattccggtatcaccatcggaggatgtcatcgaccacccttctttatacc |
100 |
Q |
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| T |
39988384 |
ggcctccatacactggcccacaccaccggcttatccttccacgacaagaatattccggtatcaccatcggaggatgtcatcgaccacccttctttatacc |
39988285 |
T |
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| Q |
101 |
ttctcaataaagccctaacatcatcacaaacttcatcactaaacgacaccgtattaaacccgccaccatgcaacctcctcctccaccgcgccgccgtttc |
200 |
Q |
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| T |
39988284 |
ttctcaataaagccctaacatcatcacaaacttcatcactaaacgacaccgtattaaacccgccaccatgcaacctcctcctccaccgcgccgccgtttc |
39988185 |
T |
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| Q |
201 |
acgtctctccactgactcataag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
39988184 |
acgtctctccactgactcataag |
39988162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5364932 - 5365101
Alignment:
| Q |
1 |
ggcctccatacactggcccacaccaccggcttatccttccacgacaagaatattccggtatcac--catcggaggatgtcatcgaccacccttctttata |
98 |
Q |
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||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||| |||| || || | |||||||||||||||| ||||| |
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| T |
5364932 |
ggcctccatgcactggcccacaccaccggttgttccttccacgtcaagaatattccggcatcattacaccgta-----tcatcgaccacccttccttata |
5365026 |
T |
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| Q |
99 |
ccttctcaataaagccctaacatcatcacaaacttcatcactaaacgacaccgtattaaacccgccaccatgcaa |
173 |
Q |
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| T |
5365027 |
cctcctcaacaaagccctaacatcatcacaaacttcctcactaaacgccaccgtattaaaccctcgaccatgcaa |
5365101 |
T |
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