View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_103 (Length: 276)
Name: NF1242_low_103
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_103 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 30411555 - 30411800
Alignment:
| Q |
1 |
ctcaactaagaaaaacagagaattttgacgttgttatgtcaatgttgatggtgaggttcagctccaaagctccataggagtggagctgaaaccaatgaaa |
100 |
Q |
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| T |
30411555 |
ctcaactaagaaaaacagagaattttgacgttgttatgtcaatgttgatggtgaggttcagctccaaagctccataggagtggagctgaaaccaatgaaa |
30411654 |
T |
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| Q |
101 |
ctgaaaatttgaagcttattcagcaaatgtaaatctctatttcactccatacaacacacacaacatggcacctcaaaacatacataaatatagtcatttc |
200 |
Q |
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||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411655 |
ctggaaatttgaagcttattctgc-aatgtaaatctctatttcactccatacaacacacacaacatggcacctcaaaacatacataaatatagtcatttc |
30411753 |
T |
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| Q |
201 |
acacgtattaaataaagactattaattaagaaaaataataataattt |
247 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30411754 |
gcacgtattaaataaagactataaattaagaaaaataataataattt |
30411800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 30399242 - 30399358
Alignment:
| Q |
1 |
ctcaactaagaaaaacagagaattttgacgttgttatgtcaatgttgatggtgaggttcagctccaaagctccataggagtggagctgaaaccaatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||| | | |||||||||| ||||| ||| ||||||| || |||||||||||||| ||||||| |
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| T |
30399242 |
ctcaactaagaaaaacagagaattttgatgttgttattttatagttgatggtggggttc-gct--ttagctccagagaagtggagctgaaacgaatgaaa |
30399338 |
T |
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| Q |
101 |
ctgaaaatttgaagcttatt |
120 |
Q |
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| ||||||||||||||||| |
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| T |
30399339 |
cgaaaaatttgaagcttatt |
30399358 |
T |
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