View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_106 (Length: 274)

Name: NF1242_low_106
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_106
NF1242_low_106
[»] chr4 (4 HSPs)
chr4 (1-266)||(40379492-40379757)
chr4 (1-39)||(38944410-38944448)
chr4 (12-48)||(5880326-5880362)
chr4 (12-48)||(42550463-42550499)
[»] chr5 (1 HSPs)
chr5 (1-50)||(41215264-41215313)
[»] chr1 (5 HSPs)
chr1 (1-49)||(7204537-7204585)
chr1 (15-50)||(5790108-5790143)
chr1 (2-47)||(11080991-11081036)
chr1 (1-50)||(29511158-29511206)
chr1 (15-48)||(48302336-48302369)
[»] chr8 (1 HSPs)
chr8 (1-50)||(40418178-40418227)
[»] chr2 (1 HSPs)
chr2 (1-50)||(13491076-13491125)
[»] chr7 (1 HSPs)
chr7 (10-42)||(39580587-39580619)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 40379757 - 40379492
Alignment:
Q  1 aactcatatacataaagtggaggtattgggattcgaaccccggtcatgacttatcattcatactaaaaaatatggaatgtggcatcaataaataaataat 100  Q
    |||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  40379757 aactcacacacataaagtggaggtattgagagtcgaaccccggtcatgacttatcattcatactaaaaaaaaaggaatgtggcatcaataaataaataat 40379658  T
Q  101 gtgatcgaaaacaaattaaacggttaccctttcttccattcattacggttacaaatacagtggaaaccaaccaaccaagccaacgcaaacacaaaccacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40379657 gtgatcgaaaacaaattaaacggttaccctttcttccattcattacggttacaaatacagtggaaaccaaccaaccaagccaacgcaaacacaaaccacc 40379558  T
Q  201 ctattattttcttcttaccaatcatcacatcgcaacaagagaggcgtcttaataaacgttcatctc 266  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40379557 ctattattttcttcttaccaatcatcacatcgtaacaagagaggcgtcttaataaacgttcatctc 40379492  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38944410 - 38944448
Alignment:
Q  1 aactcatatacataaagtggaggtattgggattcgaacc 39  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  38944410 aactcacatacataaagtggaggtattggggttcgaacc 38944448  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 5880326 - 5880362
Alignment:
Q  12 ataaagtggaggtattgggattcgaaccccggtcatg 48  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  5880326 ataaagtggaggtatcggggttcgaaccccggtcatg 5880362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 42550463 - 42550499
Alignment:
Q  12 ataaagtggaggtattgggattcgaaccccggtcatg 48  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  42550463 ataaagtggaggtactgggattcgaatcccggtcatg 42550499  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41215264 - 41215313
Alignment:
Q  1 aactcatatacataaagtggaggtattgggattcgaaccccggtcatgac 50  Q
    |||||||||||||||||||||||||| ||| ||| ||||||| |||||||    
T  41215264 aactcatatacataaagtggaggtatcggggttcaaaccccgatcatgac 41215313  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7204537 - 7204585
Alignment:
Q  1 aactcatatacataaagtggaggtattgggattcgaaccccggtcatga 49  Q
    |||||| ||||| ||||||||||||| ||| ||||||||||||||||||    
T  7204537 aactcacatacacaaagtggaggtatcggggttcgaaccccggtcatga 7204585  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 5790143 - 5790108
Alignment:
Q  15 aagtggaggtattgggattcgaaccccggtcatgac 50  Q
    |||||||||||| |||||||||||||||||||||||    
T  5790143 aagtggaggtatcgggattcgaaccccggtcatgac 5790108  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11080991 - 11081036
Alignment:
Q  2 actcatatacataaagtggaggtattgggattcgaaccccggtcat 47  Q
    ||||||| ||||||||||||||||| ||| || |||||||||||||    
T  11080991 actcatacacataaagtggaggtatcggggtttgaaccccggtcat 11081036  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29511206 - 29511158
Alignment:
Q  1 aactcatatacataaagtggaggtattgggattcgaaccccggtcatgac 50  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||||||||||    
T  29511206 aactcatacacataaa-tggaggtatcggggttcgaaccccggtcatgac 29511158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 48302369 - 48302336
Alignment:
Q  15 aagtggaggtattgggattcgaaccccggtcatg 48  Q
    ||||||||||| ||||||||||||||||||||||    
T  48302369 aagtggaggtactgggattcgaaccccggtcatg 48302336  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40418227 - 40418178
Alignment:
Q  1 aactcatatacataaagtggaggtattgggattcgaaccccggtcatgac 50  Q
    |||||| | ||||||||||||||||| ||| ||||||| |||||||||||    
T  40418227 aactcacacacataaagtggaggtatcggggttcgaactccggtcatgac 40418178  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 13491125 - 13491076
Alignment:
Q  1 aactcatatacataaagtggaggtattgggattcgaaccccggtcatgac 50  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||||||||    
T  13491125 aactcacacacacaaagtggaggtattgaggttcgaaccccggtcatgac 13491076  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 39580587 - 39580619
Alignment:
Q  10 acataaagtggaggtattgggattcgaaccccg 42  Q
    |||||||||||||||| ||||||||||||||||    
T  39580587 acataaagtggaggtactgggattcgaaccccg 39580619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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