View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_11 (Length: 600)
Name: NF1242_low_11
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 30 - 588
Target Start/End: Original strand, 1748270 - 1748828
Alignment:
| Q |
30 |
tatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgtccgagaatacacatcc |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1748270 |
tatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgcccgagaatacacatcc |
1748369 |
T |
|
| Q |
130 |
aattgggcttgggcgaagttttggaaatcttgcttagacgcattttgtatggtccactcacccgtccattcccctacnnnnnnnnnnnncatatcaaaaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1748370 |
aattgggcttgggcgaagttttggaaatcttgcttagacgcattttgtatggtccactcacccgtccattcccctacaaaaagaaaaaacatatcaaaaa |
1748469 |
T |
|
| Q |
230 |
catatagttatccccaatatatactatgcatgagttagttagcatttgccatatttcatatatgtattaaatcacatttcatccctatctccgcacacat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1748470 |
catatagttatccccaatatatactatgcatgagttagttagcatttgccatatttcatatatgtattaaatcacatttcatccctatctccacacacat |
1748569 |
T |
|
| Q |
330 |
atatataccaataaaattggtaggatttggtttttacctataaaagtaagagcatttgttgaagatacaccagcaagatctgatgctctttcatttctta |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748570 |
atatataccaataaaattggtaggatttggtttttacctataaaagtaagagcatttgttgaagatacaccagcaagatctgatgctctttcatttctta |
1748669 |
T |
|
| Q |
430 |
tgaagtcgatattttgttgaacattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaa |
529 |
Q |
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| T |
1748670 |
tgaagtcgatattttgttgaacattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaa |
1748769 |
T |
|
| Q |
530 |
tgagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctctg |
588 |
Q |
| |
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| T |
1748770 |
tgagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctctg |
1748828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 351 - 582
Target Start/End: Original strand, 1717239 - 1717470
Alignment:
| Q |
351 |
aggatttggtttttacctataaaagtaagagcatttgttgaagatacaccagcaagatctgatgctctttcatttcttatgaagtcgatattttgttgaa |
450 |
Q |
| |
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|||||||||| |||||||| |||| |||||||||||| |||||| |||||| |||||| | ||||| |||||||||||| |||| ||||||||||||| |
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| T |
1717239 |
aggatttggtatttacctacaaaactaagagcatttgatgaagagacaccactaagatcccaggctctatcatttcttatgtagtcaatattttgttgaa |
1717338 |
T |
|
| Q |
451 |
cattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatc |
550 |
Q |
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||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||| | ||||| | ||||||||||||||| ||||||||| |
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| T |
1717339 |
cattcatgccattgaatttgtccgaatacaaattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaagtttagaatc |
1717438 |
T |
|
| Q |
551 |
tccatccaatggatttgacatgatcacataag |
582 |
Q |
| |
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| T |
1717439 |
tgtggccaatggatttgacatgatcacataag |
1717470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 351 - 582
Target Start/End: Original strand, 1738734 - 1738967
Alignment:
| Q |
351 |
aggatttggtt--tttacctataaaagtaagagcatttgttgaagatacaccagcaagatctgatgctctttcatttcttatgaagtcgatattttgttg |
448 |
Q |
| |
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||||||||||| |||||||| |||| |||||||||||| ||||| | |||| |||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
1738734 |
aggatttggttattttacctacaaaactaagagcatttgaagaagagaaaccactaagatccccggctctgtcatttcttatgaagtcaatattttgttg |
1738833 |
T |
|
| Q |
449 |
aacattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaa |
548 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||| ||| ||| |
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| T |
1738834 |
aacattcatgccattgaatttgtcccaaaacatattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaagtttggaa |
1738933 |
T |
|
| Q |
549 |
tctccatccaatggatttgacatgatcacataag |
582 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| |
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| T |
1738934 |
tctgtggccaatgggtttgacatgatcacataag |
1738967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 363 - 583
Target Start/End: Original strand, 1753919 - 1754139
Alignment:
| Q |
363 |
ttacctataaaagtaagagcatttgttgaagatacaccagcaagatctgatgctctttcatttcttatgaagtcgatattttgttgaacattcatgccat |
462 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||| || || ||||||||| |||||||| || ||||| |||| ||||||||||||||||||||| | |
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| T |
1753919 |
ttacctacaaaactaagagcgtttgttgaagagacgccgctaagatctgaggctctttcgttgtttatgtagtcaatattttgttgaacattcatgttag |
1754018 |
T |
|
| Q |
463 |
tgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatctccatccaatgg |
562 |
Q |
| |
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||||||| ||| || | | |||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||| ||||||||||| |||||||||| |
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| T |
1754019 |
tgaatttgtccgaataaagattgtagtaatgcacatcaaggacaactttgttgaatccagtgacaaatgagagaagtactttagaatctgcatccaatgg |
1754118 |
T |
|
| Q |
563 |
atttgacatgatcacataagc |
583 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
1754119 |
gtttgacattatcacataagc |
1754139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 1753526 - 1753637
Alignment:
| Q |
30 |
tatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgtccgagaatacacatcc |
129 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| | ||| | ||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
1753526 |
tatgtaaccattctcgatcatccacttgagactccaatggttatattgacatttgtatgcccaataagcccatccaaatgttgcacgagaatacacatct |
1753625 |
T |
|
| Q |
130 |
aattgggcttgg |
141 |
Q |
| |
|
| ||| |||||| |
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|
| T |
1753626 |
agttgtgcttgg |
1753637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 1716974 - 1717085
Alignment:
| Q |
30 |
tatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgtccgagaatacacatcc |
129 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||| | ||| | ||||||||||||| |||||| |||||||||||||||| |||||||||||||| |
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|
| T |
1716974 |
tatgtaaccattctcgatcaaccacttgagactccaatggttatattgacatttgtaggcccaataggcccatccaaatgttgcatgagaatacacatcc |
1717073 |
T |
|
| Q |
130 |
aattgggcttgg |
141 |
Q |
| |
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| ||| |||||| |
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|
| T |
1717074 |
atttgtgcttgg |
1717085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 1738380 - 1738556
Alignment:
| Q |
30 |
tatgtaaccattctcgatcatccacttaaggctccaacgattaaactgacatttgtaggaccaataagcccatccaaatgttgtccgagaatacacatcc |
129 |
Q |
| |
|
|||||||||||| ||||||| |||||| || ||||| ||| ||||||||| ||||||||| |||||||||||||||||| |||||||| |||||| |
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|
| T |
1738380 |
tatgtaaccattttcgatcaaccacttgagactccatttgttattctgacatttataggaccaaaaagcccatccaaatgttgcacgagaatatacatcc |
1738479 |
T |
|
| Q |
130 |
aattgggcttgggcgaagttttggaaatcttgcttagacgcattttgtatggtccactcacccgtccattcccctac |
206 |
Q |
| |
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| ||| | |||| | | ||||| | |||||| |||||||| ||||||| |||| ||| |||||||||||||||| |
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| T |
1738480 |
atttgtgtttggacatatctttggtagtcttgcatagacgcaccttgtatgctccattcagccgtccattcccctac |
1738556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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