View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_114 (Length: 266)
Name: NF1242_low_114
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_114 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 36528029 - 36527802
Alignment:
| Q |
30 |
gtgtgtttggtaggaaatacattgttttccttttatgtcccattcccggtaattgttgttgacaaaagcattttgtcccgtaagaatatcctaaataggg |
129 |
Q |
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| T |
36528029 |
gtgtgtttggtaggaaatacattgttttccttttatgtcccattcccggtaattgttgttaacaaaagcattttgtcccgtaagaatatcctaaataggg |
36527930 |
T |
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| Q |
130 |
tttcattgtgagtttcaaacgtactgtgcaaccgttctataatttttgttatcatttgagcacatctttcttgaat---aatatctcattgcaaataagt |
226 |
Q |
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| T |
36527929 |
tttcattgtgagtttcaaacgtactgtgcaaccgttctataatttttgttatcatttgagcacatctttcttgaataataatatctcattgcaaataagt |
36527830 |
T |
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| Q |
227 |
ttcaaacatacatcaagcgtgatatatt |
254 |
Q |
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| T |
36527829 |
ttcgaacatacatcaagcatgatatatt |
36527802 |
T |
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