View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1242_low_116 (Length: 265)

Name: NF1242_low_116
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1242_low_116
NF1242_low_116
[»] chr6 (5 HSPs)
chr6 (9-250)||(6982757-6982998)
chr6 (105-172)||(28138404-28138471)
chr6 (121-182)||(28867799-28867860)
chr6 (107-170)||(10501975-10502038)
chr6 (115-170)||(31934726-31934781)
[»] chr5 (5 HSPs)
chr5 (29-182)||(33417422-33417572)
chr5 (107-166)||(31610042-31610101)
chr5 (105-166)||(11888182-11888243)
chr5 (107-170)||(27584699-27584762)
chr5 (107-163)||(18979870-18979926)
[»] chr2 (12 HSPs)
chr2 (29-166)||(21949823-21949960)
chr2 (107-174)||(14555885-14555952)
chr2 (107-170)||(30426133-30426196)
chr2 (107-170)||(32229984-32230047)
chr2 (105-174)||(13698130-13698199)
chr2 (107-166)||(9446973-9447032)
chr2 (107-166)||(31320254-31320313)
chr2 (105-164)||(40275144-40275203)
chr2 (105-151)||(41411524-41411570)
chr2 (105-173)||(38346696-38346764)
chr2 (115-182)||(18559723-18559790)
chr2 (59-103)||(45212799-45212843)
[»] chr7 (8 HSPs)
chr7 (59-175)||(49094501-49094617)
chr7 (59-182)||(38836130-38836252)
chr7 (99-175)||(8308206-8308282)
chr7 (107-170)||(25862613-25862676)
chr7 (105-163)||(8425057-8425115)
chr7 (105-174)||(30559364-30559433)
chr7 (107-170)||(4277323-4277386)
chr7 (107-170)||(32033796-32033859)
[»] chr4 (5 HSPs)
chr4 (59-176)||(2048981-2049097)
chr4 (105-174)||(3958947-3959016)
chr4 (107-171)||(39735815-39735879)
chr4 (107-170)||(16595098-16595161)
chr4 (107-156)||(1558385-1558434)
[»] chr3 (4 HSPs)
chr3 (75-176)||(11536248-11536348)
chr3 (59-182)||(3848243-3848364)
chr3 (105-174)||(3830681-3830750)
chr3 (105-175)||(3792501-3792571)
[»] chr8 (6 HSPs)
chr8 (99-175)||(6596514-6596590)
chr8 (88-182)||(40715937-40716030)
chr8 (116-174)||(19168176-19168234)
chr8 (67-177)||(39528379-39528495)
chr8 (105-164)||(26155284-26155343)
chr8 (107-167)||(4922779-4922839)
[»] chr1 (10 HSPs)
chr1 (107-170)||(42080695-42080758)
chr1 (115-166)||(18438600-18438651)
chr1 (115-166)||(18449458-18449509)
chr1 (115-166)||(18454551-18454602)
chr1 (105-164)||(43403896-43403955)
chr1 (105-174)||(52242886-52242959)
chr1 (107-170)||(16140380-16140443)
chr1 (107-170)||(40632849-40632912)
chr1 (115-169)||(9057927-9057981)
chr1 (107-156)||(48769905-48769954)
[»] scaffold0060 (1 HSPs)
scaffold0060 (105-174)||(18921-18989)
[»] scaffold0141 (1 HSPs)
scaffold0141 (105-169)||(16535-16599)
[»] scaffold0267 (1 HSPs)
scaffold0267 (105-174)||(7443-7512)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 6982998 - 6982757
Alignment:
Q  9 agcatagggtacacatacctctaaagaattctaaacagacttagtagtatttatgcataatatttgagtatcgaacctgcctaatcctctaatcataaat 108  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  6982998 agcaaagggtacacatacctctaaagaattctaaatagacttagtagtatttatgcataatgtttgagtatcgaacctgcctaattctctaatcacaaat 6982899  T
Q  109 atttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttttttgtgaacctgaactcttgtatgtgaacttgac 208  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||     
T  6982898 atttaagattgcttttgattacacccttttttgaacgagtttgtatgtgctcactacttatgcttttttgtaaacctgaactcttgtatgtgaacctgat 6982799  T
Q  209 atacggctctacaatttaaagttagaatatgtgtgttagagt 250  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  6982798 atatggctctacaatttaaagttagaatatgtgtgttagagt 6982757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 28138404 - 28138471
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgct 172  Q
    |||||||||||||| ||||||| |||||||||||| |||||| ||| |||||||| ||||||||||||    
T  28138404 aaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 28138471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 28867799 - 28867860
Alignment:
Q  121 ttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttttttgtgaa 182  Q
    ||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |||||    
T  28867799 ttttgattacaaccttttttaaacgagtttgtatgtactcactacttgtgctttttagtgaa 28867860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 10501975 - 10502038
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||| ||||||||||| |||||||||||||| |||||| |||| ||||||| ||||||||||    
T  10501975 atatttgggattgctttttattacaccctttttggaacgagtttggatgtgcttactacttgtg 10502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 31934781 - 31934726
Alignment:
Q  115 gattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||||||| |||||||||||||| || ||| |||| |||| |||||||||||||    
T  31934781 gattgcttttaattacaccctttttagatcgagtttggatgttctcactacttgtg 31934726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 33417572 - 33417422
Alignment:
Q  29 ctaaagaattctaaacagacttagtagtatttatgcataatatttgagtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgatt 128  Q
    |||||||||||||| ||||| ||  ||   ||||||| || || |||||||| ||||  |||||||||||||||| |||||||||||||| |||||||||    
T  33417572 ctaaagaattctaatcagacataacag---ttatgcaaaaaatatgagtatcaaaccatcctaatcctctaatcacaaatatttaggattacttttgatt 33417476  T
Q  129 acacccttttttgaacgaatttgtatgtgctcactacttgtgcttttttgtgaa 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  33417475 acaccctttttagaacgaatttgtatgtgctcactacttgtgctttttggtgaa 33417422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 31610101 - 31610042
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactact 166  Q
    |||||| |||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  31610101 atatttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactact 31610042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 11888182 - 11888243
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactact 166  Q
    ||||||||  ||||||||||||| |||||||| || |||||||||||||| |||||||||||    
T  11888182 aaatattttagattgcttttgatcacacccttcttggaacgaatttgtatatgctcactact 11888243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 27584762 - 27584699
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||||||||||  ||| || ||||||||||| |||||| |||| ||||||||||||||||||    
T  27584762 atatttaggattgtgttttataacaccctttttggaacgagtttggatgtgctcactacttgtg 27584699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 18979926 - 18979870
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcact 163  Q
    |||||| |||||| ||||||| ||||||||||| |||||| |||||||||| |||||    
T  18979926 atatttgggattggttttgatgacaccctttttagaacgagtttgtatgtgatcact 18979870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 21949823 - 21949960
Alignment:
Q  29 ctaaagaattctaaacagacttagtagtatttatgcataatatttgagtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgatt 128  Q
    |||||||||||||| ||||| |||||| | || || | ||||||||| |||| || || |||||||||||||||| |||||||| |||||||||||||||    
T  21949823 ctaaagaattctaatcagacatagtagcagttttgtagaatatttgaatatcaaatcttcctaatcctctaatcacaaatatttgggattgcttttgatt 21949922  T
Q  129 acacccttttttgaacgaatttgtatgtgctcactact 166  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  21949923 acaccctttttagaacgagtttgtatgtgctcactact 21949960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 14555952 - 14555885
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||| |||||||||||||| ||||||||||| |||||| ||||||| || ||||| ||||||||||    
T  14555952 atatttgggattgcttttgatcacaccctttttggaacgagtttgtatatgatcactgcttgtgcttt 14555885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 30426133 - 30426196
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||| |||||| |||| |||||||||||||| |||||| |||| ||||||||||||||||||    
T  30426133 atattttggattgttttttattacaccctttttggaacgagtttggatgtgctcactacttgtg 30426196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 32229984 - 32230047
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||| |||||| |||| |||||||||||||| |||||| |||| ||||||||||||||||||    
T  32229984 atattttggattgttttttattacaccctttttggaacgagtttggatgtgctcactacttgtg 32230047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 13698199 - 13698130
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||||| |||||||||||||| ||||||||  | |||| | |||| ||||||||||||||||||||||    
T  13698199 aaatattttggattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtgcttt 13698130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 9447032 - 9446973
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactact 166  Q
    |||||| |||||||||||||| ||||||||||| |||||  ||||| |||||||||||||    
T  9447032 atatttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactact 9446973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 31320313 - 31320254
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactact 166  Q
    |||||| |||||||||||||| ||||||||||| |||||  |||||||| ||||||||||    
T  31320313 atatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactact 31320254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 40275203 - 40275144
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcacta 164  Q
    |||||||| |||||||||||||| ||||||||||| |||||| ||||||| || ||||||    
T  40275203 aaatatttgggattgcttttgatgacaccctttttagaacgagtttgtatttgttcacta 40275144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 41411524 - 41411570
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttg 151  Q
    |||||||| |||||||||||||||||||||||||| |||||| ||||    
T  41411524 aaatatttgggattgcttttgattacaccctttttggaacgagtttg 41411570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 38346696 - 38346764
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgctt 173  Q
    ||||||||||||||| |||| |  ||| |||||| ||||||| | ||||| ||||||||||||||||||    
T  38346696 aaatatttaggattgttttttaccacatccttttgtgaacgagtatgtatctgctcactacttgtgctt 38346764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 18559723 - 18559790
Alignment:
Q  115 gattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttttttgtgaa 182  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||  ||||| | |||||| |||||    
T  18559723 gattgcttttgattacgccctttttagaacgagtttgtatctgctcgttacttatactttttggtgaa 18559790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 45212843 - 45212799
Alignment:
Q  59 ttatgcataatatttgagtatcgaacctgcctaatcctctaatca 103  Q
    ||||||| ||||| |||||||| ||||| ||||||||||||||||    
T  45212843 ttatgcaaaatatatgagtatcaaaccttcctaatcctctaatca 45212799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 49094501 - 49094617
Alignment:
Q  59 ttatgcataatatttgagtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgc 158  Q
    ||||||| ||||| |||||| | ||||| |||||||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||  |||||||||||    
T  49094501 ttatgcaaaatatatgagtaccaaaccttcctaatcctctaatcacaaatatttgggattgcttttgataacaccttttttggaacgtgtttgtatgtgc 49094600  T
Q  159 tcactacttgtgctttt 175  Q
    |||||||||||||||||    
T  49094601 tcactacttgtgctttt 49094617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 38836252 - 38836130
Alignment:
Q  59 ttatgcataatatttgagtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgc 158  Q
    ||||||| ||||  |||||||| || || |||||||||||||||| || ||||| |||||||||||||| ||||| ||||| |||||| ||||||| |||    
T  38836252 ttatgcaaaatacatgagtatcaaatcttcctaatcctctaatcacaa-tatttgggattgcttttgataacaccatttttggaacgagtttgtatatgc 38836154  T
Q  159 tcactacttgtgcttttttgtgaa 182  Q
    |||||||||||||||||| |||||    
T  38836153 tcactacttgtgctttttggtgaa 38836130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 8308206 - 8308282
Alignment:
Q  99 aatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgctttt 175  Q
    ||||| |||||||| ||||| ||||||||||||  |||||| |||||| |||||||||||||||||||||| |||||    
T  8308206 aatcacaaatatttgggattacttttgattacattctttttagaacgagtttgtatgtgctcactacttgtactttt 8308282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 25862613 - 25862676
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||||||||||||||| |||||||||||||| || ||| |||| ||||||||||||||||||    
T  25862613 atatttaggattgcttttaattacaccctttttggatcgagtttggatgtgctcactacttgtg 25862676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 8425115 - 8425057
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcact 163  Q
    |||||||| |||||||||||||| |||||||| || |||||| ||||||||||||||||    
T  8425115 aaatattttggattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 30559364 - 30559433
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||| ||| |||||||||||||| ||||||||||| |||| | ||| ||||||||||| |||||||||||    
T  30559364 aaatctttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgcttt 30559433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 4277386 - 4277323
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||| ||||||||||| || ||||||||||| ||  || |||| ||||||||||||||||||    
T  4277386 atatttgggattgcttttaatgacaccctttttggattgattttggatgtgctcactacttgtg 4277323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 32033859 - 32033796
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||||||||||  ||| || ||||||||||| |||||| |||| || |||||||||||||||    
T  32033859 atatttaggattgtgttttataacaccctttttggaacgagtttggatatgctcactacttgtg 32033796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 176
Target Start/End: Complemental strand, 2049097 - 2048981
Alignment:
Q  59 ttatgcataatatttgagtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgc 158  Q
    ||||||| ||||  |||||||| ||||| |||||||||||||||| || ||||| |||||||||||||| ||||||||||| |||||| ||||||| |||    
T  2049097 ttatgcaaaatacatgagtatcaaaccttcctaatcctctaatcacaa-tatttgggattgcttttgataacaccctttttggaacgagtttgtatatgc 2048999  T
Q  159 tcactacttgtgcttttt 176  Q
    ||||||||||||||||||    
T  2048998 tcactacttgtgcttttt 2048981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 3958947 - 3959016
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||    
T  3958947 aaatatttgggattgcttttgatgacaccctttttagaacgagtttgtatgtgctcactatttgtgcttt 3959016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 39735879 - 39735815
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgc 171  Q
    |||||| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  39735879 atattttggattgcttttgattacacccttcttggaacgagtttgtatgtgctcactacttgtgc 39735815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 16595098 - 16595161
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||| ||||||||||| || |||||||||||  ||||| |||| |||| |||||||||||||    
T  16595098 atatttgggattgctttttataacaccctttttgaaacgagtttggatgtactcactacttgtg 16595161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 1558385 - 1558434
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgt 156  Q
    |||||| |||||| ||||||| ||||||||||| |||||| |||||||||    
T  1558385 atatttgggattggttttgatgacaccctttttagaacgagtttgtatgt 1558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 11536348 - 11536248
Alignment:
Q  75 agtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||| |||||| ||||||||||||||| || |||||  ||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  11536348 agtatcaaacctgtctaatcctctaatcacaa-tatttgtgattgttttttattacacccttttttaaacgagtttgtatgtgctcactacttgtgcttt 11536250  T
Q  175 tt 176  Q
    ||    
T  11536249 tt 11536248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 3848243 - 3848364
Alignment:
Q  59 ttatgcataatatttgagtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgc 158  Q
    ||||||| ||||| |||||||| ||| | ||||||| |||||||||||||||||||||||| ||||  |  ||||||||||  ||||| ||||||| | |    
T  3848243 ttatgcagaatatatgagtatcaaactttcctaatcatctaatcataaatatttaggattgttttt--taccaccctttttgaaacgagtttgtattttc 3848340  T
Q  159 tcactacttgtgcttttttgtgaa 182  Q
    ||||||||| || ||||| |||||    
T  3848341 tcactacttatgttttttggtgaa 3848364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 3830681 - 3830750
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||||| |||||||||||||| |||| |||  | |||||| |||| ||||||||||||||||||||||    
T  3830681 aaatattttggattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtgcttt 3830750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 3792501 - 3792571
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgctttt 175  Q
    |||||||| |||||||||||||| ||||| ||  | |||||| |||| ||||||||||||||| |||||||    
T  3792501 aaatattttggattgcttttgatcacacctttcatggaacgagtttgaatgtgctcactacttatgctttt 3792571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 6596590 - 6596514
Alignment:
Q  99 aatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgctttt 175  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||| |||||||    
T  6596590 aatcacaaatatttaggattgcttttgattacaccctttttagaatgagtttggatgtgctcactacttatgctttt 6596514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 40716030 - 40715937
Alignment:
Q  88 cctaatcctctaatcataaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttttttgtgaa 182  Q
    |||||||||||||||| || ||||||||||||||||||||  || | |||||  ||||| ||||||||||||||||||||||| ||||| |||||    
T  40716030 cctaatcctctaatcacaa-tatttaggattgcttttgatagcatcttttttgaaacgagtttgtatgtgctcactacttgtgttttttggtgaa 40715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 19168234 - 19168176
Alignment:
Q  116 attgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||| || |||||||||    
T  19168234 attgcttttgatgacaccctttttagaacgagtttgtatgtgctcaataattgtgcttt 19168176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 39528495 - 39528379
Alignment:
Q  67 aatatttgagtatcgaacctgcctaatcctctaatcataaatatttaggattgcttttgattacacccttttttgaac------gaatttgtatgtgctc 160  Q
    |||||| ||||||| ||||| |||||||||||||||| ||||||||  | |||||| ||| ||| |||||||| ||||      | | |||||||||||     
T  39528495 aatattagagtatcaaaccttcctaatcctctaatcacaaatatttgaggttgcttctgactacgccctttttggaacaagtttgcaattgtatgtgctt 39528396  T
Q  161 actacttgtgctttttt 177  Q
    |||||||||||||||||    
T  39528395 actacttgtgctttttt 39528379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 26155343 - 26155284
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcacta 164  Q
    |||||||| |||||||||||||| || | |||||| |||||| |||||||||| ||||||    
T  26155343 aaatatttgggattgcttttgatgacgcactttttagaacgagtttgtatgtgttcacta 26155284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 4922839 - 4922779
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactactt 167  Q
    |||||| ||| ||||||| || | ||||||||| |||||| |||| |||||||||||||||    
T  4922839 atatttgggaatgctttttatgagaccctttttggaacgagtttgaatgtgctcactactt 4922779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 42080695 - 42080758
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  42080695 atatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactacttgtg 42080758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 18438651 - 18438600
Alignment:
Q  115 gattgcttttgattacacccttttttgaacgaatttgtatgtgctcactact 166  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  18438651 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 18438600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 18449509 - 18449458
Alignment:
Q  115 gattgcttttgattacacccttttttgaacgaatttgtatgtgctcactact 166  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  18449509 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 18449458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 18454602 - 18454551
Alignment:
Q  115 gattgcttttgattacacccttttttgaacgaatttgtatgtgctcactact 166  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  18454602 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 18454551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 43403896 - 43403955
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcacta 164  Q
    |||||||| |||||||||||||| ||||||||||| |||||| ||||||| || ||||||    
T  43403896 aaatatttgggattgcttttgatgacaccctttttagaacgagtttgtatttgttcacta 43403955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 52242886 - 52242959
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttg----tatgtgctcactacttgtgcttt 174  Q
    |||||||| |||||||||||||| |||||||| || |||||| ||||    |||||||||||||||||| ||||    
T  52242886 aaatattttggattgcttttgatcacacccttcttggaacgagtttgtatatatgtgctcactacttgtacttt 52242959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 16140380 - 16140443
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    ||||||||| ||||||||||||||| |||||||   |||| |||| || |||||||||||||||    
T  16140380 atatttagggttgcttttgattacatcctttttaagacgagtttggatttgctcactacttgtg 16140443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 40632912 - 40632849
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtg 170  Q
    |||||| ||||||||||||||||| |||||||| ||| || |||| || |||||||||| ||||    
T  40632912 atatttgggattgcttttgattacgccctttttagaatgagtttggatatgctcactacctgtg 40632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 9057981 - 9057927
Alignment:
Q  115 gattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgt 169  Q
    |||||||||||||||||||||||||   || | |||| |||||||||||||||||    
T  9057981 gattgcttttgattacaccctttttgagacaagtttggatgtgctcactacttgt 9057927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 48769954 - 48769905
Alignment:
Q  107 atatttaggattgcttttgattacacccttttttgaacgaatttgtatgt 156  Q
    |||||| |||||| ||||||| ||||||||||  ||||||||||||||||    
T  48769954 atatttgggattggttttgatgacacccttttcagaacgaatttgtatgt 48769905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 18989 - 18921
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||||| |||||||||||||| |||||| |||| |||||| |||||||||||||| || |||||||||    
T  18989 aaatatttgggattgcttttgatgacaccc-ttttagaacgagtttgtatgtgctcaataattgtgcttt 18921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 16535 - 16599
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgt 169  Q
    |||||||| |||||||||||||| |||||||| || |||||| ||| |||||||||||| |||||    
T  16535 aaatattttggattgcttttgatcacacccttcttggaacgagtttatatgtgctcactccttgt 16599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 7443 - 7512
Alignment:
Q  105 aaatatttaggattgcttttgattacacccttttttgaacgaatttgtatgtgctcactacttgtgcttt 174  Q
    |||||||| |||||||||||||| |||| |||  | |||||| |||| |||| || ||||||||||||||    
T  7443 aaatattttggattgcttttgatcacactcttcatggaacgagtttgaatgtacttactacttgtgcttt 7512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University