View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_121 (Length: 260)
Name: NF1242_low_121
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_121 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 53478792 - 53478543
Alignment:
| Q |
1 |
ccatcagacactaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttcaagttgtttctctagctgctcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478792 |
ccatcagacactaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttcaagttgtttctctagctgctcca |
53478693 |
T |
|
| Q |
101 |
cttttgaagcagtgaaagggtaagcattttcttggtacaaatttattaagtttcttccatgtattgttattgttttaccatcaggacctataattaccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478692 |
cttttgaagcagtgaaagggtaagcattttcttggtacaaatttattaagtttcttccatgtattgttattgttttaccatcaggacctataattaccaa |
53478593 |
T |
|
| Q |
201 |
acaaggtatcccttgtacatcaaagtgtcttgcaaggttctttatctctg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478592 |
acaaggtatcccttgtacatcaaagtgtcttgcaaggttctttatctctg |
53478543 |
T |
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