View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1242_low_122 (Length: 259)
Name: NF1242_low_122
Description: NF1242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1242_low_122 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 40380326 - 40380101
Alignment:
| Q |
30 |
ataatttgagtttgagcgttgtaagaggatttggtaatcagtaaaatgaagagtnnnnnnngtgagataatattgtgataataattcaataaagagatga |
129 |
Q |
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| T |
40380326 |
ataatttgagtttgagcgttgtaagaggatttggtaatcagtaaagtgaagagtaaaaaaagtgagattatattgtg---ataattcaataaagagatga |
40380230 |
T |
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| Q |
130 |
atataattcaatttaagaaataaattcatannnnnnnncaagtattttttctggcatataagtttaattacaaacattctactaatatattttaattgta |
229 |
Q |
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| T |
40380229 |
atatgattcaatttaagaaataaattcatattttttttcaagtattttatat-gcatacaagtttaattacaaacattctactaatatattttaattgta |
40380131 |
T |
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| Q |
230 |
tcgtgtcctaaatttttaaaaattttgtgt |
259 |
Q |
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| T |
40380130 |
tcgtgtcctaaatttttaaaaaatttgtgt |
40380101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 40391667 - 40391553
Alignment:
| Q |
30 |
ataatttgagtttgagcgttgtaagaggatttggtaatcagtaaaatgaagagtnnnnnnngtgagataatattgtgataataattcaataaagagatga |
129 |
Q |
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| T |
40391667 |
ataattggagtttgagcgttgtaagaggatttggtaatcagtaaaatgaggagtaaaaaaattgagataataatgtg---ataattcaatagatagatgt |
40391571 |
T |
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| Q |
130 |
atataattcaatttaaga |
147 |
Q |
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| T |
40391570 |
atataattcaatttaaga |
40391553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 40390874 - 40390800
Alignment:
| Q |
183 |
gcatataagtttaattacaaacattctactaatatattttaattgtatcgtgtcctaaatttttaaaaattttgt |
257 |
Q |
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| T |
40390874 |
gcatacaagtttaattacaaaaattctattcatgtattttattcgtatcatgtcctaaatttttcaaaaatttgt |
40390800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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